BtaINT0118793 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031551 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr25:27451911-27453059:-
Coord C1 exon
chr25:27452840-27453059
Coord A exon
chr25:27452062-27452839
Coord C2 exon
chr25:27451911-27452061
Length
778 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGA
5' ss Score
6.99
3' ss Seq
ATGTAACTCATCTGTTTCAGCCT
3' ss Score
5.83
Exon sequences
Seq C1 exon
GGAGATTCCGGCGGTCCTGTGCTGTGCCGTGAACCTGATGGACACTGGGTTCAAGCAGGGATCATCAGTTTTGCATCAAGCTGTGCCCGGGAAGACACTCCTGTCCTGCTGACTGATATGGCTGCTCACAGCTCCTGGCTGCAGGCTCGAGCTCAGGGGGCAGCCTTCCTAACCCAGAACCCAGAGACCCCGGAGATTAGTGACGAGGACAGCTGTGTAG
Seq A exon
GTATGAGCAGTGGGTGTCAGGAGTGGGATGCAGGGGAACCTCACCCTGGGCTGCATGAGGACTTCTAGGGAGGTGGGAGCCACAGTGGAATAAATTTCAGTTCAGAATAGAAAACTGATTAATGAGGCATCCACACACTGCCACGGGCTAACAAGGGGACTTAAGGGACCCTTTCAGACCAGGATGGGAACAGCTCCATTTATGGCTGAGAGACACAGACACTTCAGAACTTTATGCATTTGGGTTCAGGTAAGAAGAGGAATTTCTGGTACCTGGCTGAAAGTCTTGGGGGTAAGATGCAAATTTTCAAGCAGGGACGCCACAAGATTGGAGAGGGCAGGGTTCCCACTCAGTGGGGCGTAAATTCTGGCGTTAAGTGACTAACATGCAAATGACATGCAAAATAGTTCCTGGGAGGAAGCTCTATCTTGATGGTAAGAGAAGCATCAGTGAGCCAGGAGTTCTGGGGCCATTCCAAGCCCAGAGGGGTGCAGACAGGCGGGGTAGAGGAATGAGCGGGCCACTCCCATGATGCTGGACCATCAGGGTTAAAAGCTTAGGCCCTGCGTTTTGAATCCCAAGTTGGCTACTTGCCTGTGGTTACTGAGCTAGAAAGTTACTGAACCTCTGGAATGTTGGTTACTGTTGGTAATGAAAATAACAAAGATTCAGCTTAAAAGGATAATGTGAGGATATTCGACAGCACACGGGAAACTCAGCGCAGGCCTGGCGTGCAGTGAGCGTTTAGAGGGCAGATGATGTAACTCATCTGTTTCAG
Seq C2 exon
CCTGTGGATCTCTGAGGAGAGAAGGCCCTCAGGCAGGAGCACCCTCCCCGTGGCCCTGGGACGCCAGGCTGAAGCACCAAGGGAAGCTGGCTTGCGGCGGAGCCCTGGTGTCAGAGGAGGTGGTGCTGACTGCTGCCCATTGCTTCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031551:ENSBTAT00000044725:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.0=62.2)
A:
NA
C2:
PF0008921=Trypsin=PU(19.9=84.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTCCGGCGGTCCTGT
R:
CACCACCTCCTCTGACACCAG
Band lengths:
344-1122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]