MmuINT0127550 @ mm9
Intron Retention
Gene
ENSMUSG00000044139 | Prss53
Description
protease, serine, 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:135031013-135032028:-
Coord C1 exon
chr7:135031809-135032028
Coord A exon
chr7:135031164-135031808
Coord C2 exon
chr7:135031013-135031163
Length
645 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
ATGTCATTTGCCTGTTTCAGCAT
3' ss Score
8.12
Exon sequences
Seq C1 exon
GGAGATTCTGGGGGACCTGTGATGTGCCGTGAGCCTGATGGACACTGGGTCCAGGTTGGAATCATTAGTTTCACATCAAAATGTGCCCAAGAGGACACCCCTGTGCTGTTGACTGACATGGCAGTACACAGTTCATGGCTGCAGGCCCATGTTCACGAGGCAGCTTTCTTGGTGCAGGCCCCAGGAGTTGTGAAGATGAGCGACGAGAACAGCTGTGTAG
Seq A exon
GTAGGTATGAGAACGGGTATCAGGACTGGGGTGTACGGGGACACCCAAGCCACATCAAGACTTCCTGAACAGTGGGTGGAAGGGCAAGGAAACAAACTTCAGCTCAGACTCAGCCTAGATGTGGCCAAGCGAGAACCAGGAGATTTGCTAAGGCCCCTTTTAGGATAGAAAGAACCCCACTGGGGCCAGGGAGTTTAAAGATCTGGGTGAAATCTGGCTGGCTTCAGGGGAAAGCTGCAAGTTTCCAGAGCGGAGATTCAGGGAGGTGAGAGAGGGCAGGGCCTGCAATGCAAATTGCATGCAAAGTCATTCCTGGGAAGGAAGCTTGGTTCTGATAGCCAGAGTTTTAGGGCTGGTACAGGCTTGGAGAAGTGCAGATGGGAGGGGGGTTGGGCAGAGCCCTTCCCGGTAAGACTAGATGGATACTGTCAGACATCAGGATTAAAAATTGTCTTTGATTCCCAAGTGGTCTACCTGGCTTGGGTTACAGAGCTCTAGGCTAAGCTCTGTTACTTTGGTTACCTTTGGTAAAGAGGCTGAAAGTCAACTCGGAAAAGGATATATAGGAAGATTTGCTAACTTACAGAAGCACTCAGCACTGAGTGACCACTAAATAAACTGGATGATGTCATTTGCCTGTTTCAG
Seq C2 exon
CATGTGGCTCCTTGAGGAGTGCAGGACCCCAGGCAGGAGCGCTCTCTCAGTGGCCCTGGGATGCCAGGCTGAAGCACCACGGGAAGCTGGCTTGTGGTGGAGCTCTGGTATCGGAGGTGGTGGTGCTGACGGCTGCTCACTGCTTTATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139-Prss53:NM_001081268:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.0=62.2)
A:
NA
C2:
PF0008921=Trypsin=PU(19.6=84.3)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTGATGTGCCGTGAG
R:
CAGTGAGCAGCCGTCAGC
Band lengths:
349-994
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: