BtaINT0118795 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031551 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr25:27451362-27451826:-
Coord C1 exon
chr25:27451582-27451826
Coord A exon
chr25:27451496-27451581
Coord C2 exon
chr25:27451362-27451495
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCTTCTCCCACACCCTGCAGACA
3' ss Score
9.5
Exon sequences
Seq C1 exon
GCGCCAGACCCCAGAGGAATGGACAGTAGGCCTGGGGGTCGGACCAGAGGAGTCGGGCCTGAAGCAAGTCATCCTGCATGGGGCATATACTCACCCGGAGGGGGGCTATGACGTGGCCCTCCTGCTGTTGGCCCAGCCTGTAACCCTGGGCCCCAGCCTACGGCCCCTCTGCCTGCCCTACTCGGACCACCGTCTGCCTGATGGGGAACGTGGCTGGGTCCTGGGGCTGGCCCGCCAAGGAGCAG
Seq A exon
GTATGTGGACAGGAGAGGGAGCCCAGCAGCTGGGCATGCAGCCTGGAGGCTGAGGTAGCAGCTGGGTCTTCTCCCACACCCTGCAG
Seq C2 exon
ACACTGGCTCCCCTCAGACAGTGCCTGTGACCCTCCTGGGGCCCAGGGCCTGTAGCCGCCTACACGCAGCCCTTGGGAGCATTCTGCCAGGGATGGTGTGTACCAGTGTTGTGGGCGAGCCGCCCAGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031551:ENSBTAT00000044725:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCTGATGGGGAACGT
R:
CCCACAACACTGGTACACACC
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]