RnoINT0118804 @ rn6
Intron Retention
Gene
ENSRNOG00000026040 | Prss53
Description
serine protease 53 [Source:RGD Symbol;Acc:1566127]
Coordinates
chr1:199331787-199332663:-
Coord C1 exon
chr1:199332422-199332663
Coord A exon
chr1:199332337-199332421
Coord C2 exon
chr1:199331787-199332336
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
GCTCCTCTTTTTCTCTACAGGCA
3' ss Score
11.25
Exon sequences
Seq C1 exon
GCGACAAACCCTAGAGGAATGGAGTGTAGGACTGGGGGCTGGACCAGAGGAATGGGGCCTGAAGCAACTCATTCTGCATGGGGCTTACACCCACCCAGAAGGCGGCCATGATGTGGCTTTCCTGCTGCTGGCTCAGCCTGTGACGTTGGGCCCTGGCCTCAGGCCCCTCTGCTTGCCCTATGCTGACCACCGCCTGCCTGACGGGGAACATGGCTGGGTTCTTGGGCTGACCCGAGAAGCAG
Seq A exon
GTACATAGGGACGGGGATCCTGGCAGCTGTCCATTGAACGTGGAGGCCACGGAGGAGGCATCCAGGCTCCTCTTTTTCTCTACAG
Seq C2 exon
GCATCAACCACCCCCATACAGTGCCTGTGACAGTCCTGGGGCCAATGGCCTGTAGCAGACAACATGCAGCTTCTGGTAGCACGGGTGTTCCCATTCTGCCAGGGATGATATGCACCACTGTTGTGGGTGAGCCACCTCACTGTGAGGTGAGTTCCAGTTCCCAATCTTTACTCAGCAGACCCCTGGCATCCTCCCACCCTGAACAGACTCTACCAGGCTTAGCTGCTAGCCCTGCTTCTCACCTGAAACTAAACCCTTCTGTGTCAGCTGGCCCCCAAACCCCTTCTATCTGTGGCAGGAAGTTACCAAGTATAACCTGCTCCTCTCTAACAGGGACTCTCTGGGGCACCACTTGTACATGAGATCAGAGGGACATGGTTCCTGGCTGGACTGCACAGCTTTGGAGACACCTGCCAAGGCTCTGCAAAGCCTGCAGTTTTTGCAGCACTTTCTGCCTATGAGGATTGGGTCAGCAATCTAGACTGGCAGGTCTACTTCGCTGAGGAGCCTGAGCCTGAGCCTGAGACCGGAAGCTGTCTGGTCAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026040:ENSRNOT00000035672:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(46.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(29.0=42.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTTGCCCTATGCTGAC
R:
AGAATGGGAACACCCGTGCTA
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]