HsaINT0133030 @ hg38
Intron Retention
Gene
ENSG00000151006 | PRSS53
Description
protease, serine 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr16:31084558-31085024:-
Coord C1 exon
chr16:31084780-31085024
Coord A exon
chr16:31084704-31084779
Coord C2 exon
chr16:31084558-31084703
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
AGCTTTCCCTTGCTCCACAGGCA
3' ss Score
9.59
Exon sequences
Seq C1 exon
GCGCCAGGCCCCAGAGGAATGGAGCGTAGGGCTGGGGACCAGACCGGAGGAGTGGGGCCTGAAGCAGCTCATCCTGCATGGAGCCTACACCCACCCTGAGGGGGGCTACGACATGGCCCTCCTGCTGCTGGCCCAGCCTGTGACACTGGGAGCCAGCCTGCGGCCCCTCTGCCTGCCCTATCCTGACCACCACCTGCCTGATGGGGAGCGTGGCTGGGTTCTGGGACGGGCCCGCCCAGGAGCAG
Seq A exon
GTAGGTGGGCACAGGGCCAGGGCTGCTGTCCATCCAACCTGCAGGCCGGGGCAGCCAGCTTTCCCTTGCTCCACAG
Seq C2 exon
GCATCAGCTCCCTCCAGACAGTGCCCGTGACCCTCCTGGGGCCTAGGGCCTGCAGCCGGCTGCATGCAGCTCCTGGGGGTGATGGCAGCCCTATTCTGCCGGGGATGGTGTGTACCAGTGCTGTGGGTGAGCTGCCCAGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151006:ENST00000280606:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTATCCTGACCACCACCTG
R:
CAGAATAGGGCTGCCATCACC
Band lengths:
168-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development