BtaINT0118796 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031551 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr25:27450932-27451495:-
Coord C1 exon
chr25:27451362-27451495
Coord A exon
chr25:27451161-27451361
Coord C2 exon
chr25:27450932-27451160
Length
201 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCTGACCTGACCCCTTTCAGGGC
3' ss Score
9
Exon sequences
Seq C1 exon
ACACTGGCTCCCCTCAGACAGTGCCTGTGACCCTCCTGGGGCCCAGGGCCTGTAGCCGCCTACACGCAGCCCTTGGGAGCATTCTGCCAGGGATGGTGTGTACCAGTGTTGTGGGCGAGCCGCCCAGCTGTGAG
Seq A exon
GTGAGCCCCACTCCCCCTAATGTCACCCCAGACCCCTCGCCCTCCCACTCACAGCCTGACCTCTCACCTGTAACTCATCCTTTCTGCCAACTGGCTCCCAAAGAGCCAGACCCCTCCAGCCCCAGCCCCTCCTGCCCCATGCAGCTGCCTAGGGAGAAGAGGAGGTCAAAAAGCAGTGTCCCCTGACCTGACCCCTTTCAG
Seq C2 exon
GGCCTGTCGGGGGCACCGCTGGTGCACGAAGTGAGGGGCACATGGTTCCTGGCTGGACTACACAGCTTCGGAGATGCCTGCCAAGGCCCCGCAAGACCTGCTGTCTTTGCGGCACTCCCCACCTACGAGAACTGGGTCAGCAGTTTGGACTGGCAGGTCTACTTTGCTGAGGAGCCTGAGCCTGAGCCTGAGCCCGAGCCCGAGCCCGGAAGCTGCACAGCTAACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031551:ENSBTAT00000044725:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.299
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.4=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.8=58.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAGACAGTGCCTGTGA
R:
CCTCAGCAAAGTAGACCTGCC
Band lengths:
296-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]