Special

MmuINT0127553 @ mm9

Intron Retention

Gene
Description
protease, serine, 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:135030042-135030609:-
Coord C1 exon
chr7:135030464-135030609
Coord A exon
chr7:135030259-135030463
Coord C2 exon
chr7:135030042-135030258
Length
205 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGTAACCTGCTCCCTAACAGGGC
3' ss Score
8.81
Exon sequences
Seq C1 exon
GCATCAACTACCCCCAGACAGTACCTGTGACAGTCCTGGGGCCGATGGCCTGTAGCAGACAGCATGCAGCTCCTGGGGGCACAGGCATCCCCATCCTGCCAGGGATGGTATGCACCACTGTCGTGGGTGAGCCCCCTCACTGTGAG
Seq A exon
GTGAGTTCAAATTCCCAATCCTTACCCAGCAGACCCTGGCATTCTCTCACCCCGCAGTGCATGAACACACTTTCTGCCAGGCTTGACTGCGAGCCCTGCTTCTCACCGCAGACTAAACCCTTCTGTGCCAGCTAGCCCCCAAACAGTTCCCAAGCCCCTTCTACCTGCTGCAGGAAGTTACCATGTGTAACCTGCTCCCTAACAG
Seq C2 exon
GGCCTCTCTGGGGCGCCACTTGTACATGAGATCAGGGGCACATGGTTCCTGGTTGGACTGCACAGCTTTGGAGACACCTGTCAAAGCTCTGCAAAGCCTGCAGTTTTTGCAGCACTCTCTGCCTACGAGGACTGGATCAGCAATCTAGACTGGCAGGTCTACTTCGCTGAGGAGCCAGAGCCTGAGGCTGAGACTGGAAGCTGCTTGGTCAACTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139-Prss53:NM_001081268:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.055
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=FE(21.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.5=61.6)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCTGTGACAGTCCTGGG
R:
GCTCCTCAGCGAAGTAGACCT
Band lengths:
302-507
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development