BtaINT0118798 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034665 | PRSS55
Description
protease, serine, 55 [Source:HGNC Symbol;Acc:HGNC:30824]
Coordinates
chr8:8587571-8589861:-
Coord C1 exon
chr8:8589669-8589861
Coord A exon
chr8:8587822-8589668
Coord C2 exon
chr8:8587571-8587821
Length
1847 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
TGGTTCTCCACCTCCACCAGGCC
3' ss Score
6.36
Exon sequences
Seq C1 exon
AATGTGGTGAAAGACCCATGTTTGCAAGAGGAGCTCAGTATTCCAGAATCACAGGAGGGATAGAGGCTGGGGTGGGTGAGTTTCCATGGCAGGTGAGTATTCAGGCAAGAAATGAACATTTCTGTGGTGGCGCCATCCTCAACGAGTGGTGGATTATCACGGCGGCTCACTGCTTTTACCCTGAGCAGTTACC
Seq A exon
GTAAGTACCAAGTTCATCCCATTTCTTCTGACAGTGCGCGCCCCCAGGGCACCCCACACTCAGCCAAGCCTGATTGCTGAGGGGAGTTCTGGAGTTGCTGCATCCCGAATCAGAAATGAATGGCCACCACCTACTGCCTTCCACCCTGGGGATTGGTCTGTCCACCTCTCCTGTGACATTCAAGTCCTTTTAGGTGGAAGTTCTCCAAATTCTGGAGGTCTCGGTTCCTGGGCCATCTGACACCTGACTTCCCTGCCCTGTGTAGAGTTTTCTCTGCATTCCAGGAGACTGGTGGAAAACAGAGGATTTAGTGATTACAAATCATGTTCTAAGAAACCATGTGCATTAACTGATTTAACCATATACACCAACCCCAAGGAAGGCAGAATGAATTGCTCCCTTTTCACTCCTTCGATCTTACAACAACCCTAGGGCAGCTAAAATGAACATCTTTATCTTATAGAGCAGGAAGCTGAAGCCCAGTAAGGCTGGGTGATTCACCCAAGGTACACATCTAGCAGACAAGAAATAGCATTTAAATCCACTTCTAGCACTTGTACTTTTCTGCTCCACCATCTCATGAAAGATTGAAGATACATCGAAAGATGACCTTTAAAAGGTTAATCAAAACCACAGGCCAAGTTTCACCCTGGGGTAACCAAGGAAACTGGCTGCATCTGCTCTCATGGGATGCTTAGGGATTGGAAAATTCCTGGCCATTCTGCCTGGAAGGAAATTCCTGAAGAGTCTTTCTGCTTCATCAGTGGCAGTGCGTCTTGCATGCTAAGTTGCTTCAGTCATATCTGACTCTTTGTGGCCCTAAGGACAGTAGCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGAAGTGGGTTGCCATGCCCTCCTCCAGGAGGTCATCTCAACCCAGGTATCAAACGTGAGTCTCTTATGTCTCTTGCATTGGCAGGTGAGTTCTTTACCACTAGGCCACCTGGGAAGCCCCATCAATGGCAGGTCTAGATTAAATTCCATTCTTGATTCTTGCATGGGCCTTCTATATATGTGTACAAGAGTTTATTTCTAAGAGATAAGTTGTAGAATCATAGGGCTGTACATCTTCAAGTTTATTAGAAGACACCAAATGATTTTTCAAAGTGGTTGCACCAATTTAAATTTCCCCCAGTGGTATATAAGTGTTAAATTCATCACCGATACTTGCTACTTTTTCAGAACTTTTAATTTTTGCTTTTCTGATGGGTGTGAAAGACTATTATCTTTGTGGTCATAATTTGTATTTTTCTTACTACTGCTACATTGATATTTTCAAGTTGATTGGTATATTTTCTCTCCTATAATGACTCTTTGAGTTTGACAGTTTTTTATTTGTAGAATCTCTTTATATATTCTGAATATTTAACTTTGGTCAGTTGTGTATGCTGCAAACAAACAAAATCCGAGTCTCTAAATTGCTGGTAGACAGGTTGATATGATAACCCTTTACCTATCTGAGGGCTGGTTTGTGTGTGCCAGTGTCGATCTGTGCTAAGTGGTCTTTTGTGGGCTCTTTGGGCAGGTGCTTGAGGGGCAAAGCTAAGTCCTGCCTTTGCCCAGTGAGGCAGGACTGTCTCATTCGGGTCTCTGGGATGATGCTGGAGCACCAAGGCGGCTGTGGTCCCACACGGGCTGTTTCACTTTCCTTCTCTACCTTTTACAAATGCTCACACCCTCTGAGCAACAGCCCCAGTAGGACAAGTCCAGAAGGCTAGTAGGACCATGTGGGGTTTAAGTCTTAGCCGTAGCAGATTCTGGGCCCCCTGTGACTTTCCTTCCTCTCTGGTTCTCCACCTCCACCAG
Seq C2 exon
GCCCACAGATCTGAGAGTCGTGCTGGGAACCAATAGCCTAACCAGCCCATCCCTGGAGATAAAGGGAGTCACAACCATCATTCGTCACAAGGACTTTCAAAGAGTCAGCATGGACAATGACATCGCTCTGCTGATGCTGGACAATCCCATCACGTTCAACGAGCTCAAAGAACCCATCTGCCTGCCCATGCAGCCCGGCCTCTCCCAGTGGCACAAATGCTGGGTGGCAGGATGGGGGCAGGTCAAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034665:ENSBTAT00000049259:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.1=73.8)
A:
NA
C2:
PF0008921=Trypsin=FE(36.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGTTTGCAAGAGGAGCT
R:
GCTCGTTGAACGTGATGGGAT
Band lengths:
343-2190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]