Special

MmuINT0127559 @ mm9

Intron Retention

Gene
ENSMUSG00000034623 | Prss55
Description
protease, serine, 55 [Source:MGI Symbol;Acc:MGI:1918287]
Coordinates
chr14:64698033-64700688:-
Coord C1 exon
chr14:64700496-64700688
Coord A exon
chr14:64698281-64700495
Coord C2 exon
chr14:64698033-64698280
Length
2215 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
ATCTGCTTCTGTGCCACCAGCCC
3' ss Score
6.14
Exon sequences
Seq C1 exon
AGTGTGGTGTGAGACCCCTGTATGATAGCAGAATTCAATACTCCAGGATCATAGAAGGGCAGGAGGCTGAGCTGGGTGAGTTTCCATGGCAGGTGAGCATTCAGGAAAGTGACCACCATTTCTGCGGCGGCTCCATTCTCAGTGAGTGGTGGATCCTCACCGTGGCCCACTGCTTCTATGCTCAGGAGCTTTC
Seq A exon
GTAAGTATTGAGGGCCCAGGTTCTCCAAGGGGTGGCAGTACTCAGCTACACCGGGCTGTGAGAGGGACCCTGGTGCAGTTGCCCCCTAGACAGACAGGAATGGTTCCCCTCCTCCCCTCCAGTCCGGAGACTCAGATGCAACTGGCAGAGCCAGAGGCTTTGTCTTTCTGTCTCCTAAAACATTGAAGTGTGCCTAGGAGGAAATTCTATTTCTTCACATCTGGCTCCCTTGGCTGTTTGTCACCCTCCTTCTTATTAGCTTATGGAGATTTCTTTGTCCTAAGCCATCAGTGGGCACCTAGCATTGGCTGACAATTATCCATATGCCAAGGTCTTTCTTAGAACTTTTCTTATATACTAATTCATTTGCCTCTACAATGACCTTTGGAAGGAGGTAAAAGAAATTCCTTTGTAGATAGGGAAAGCTAGGTCTGATGAATGTCTATGGCTTGCCCAAGTCCATGTCCAATAGACAAAAGCAAGAAGGAAAATCTGGCTTTTAGCTTCACCTCCTTCAGAACGCTCAGAAAACTGCAGGAAAGGGAGGCATTGCCTGCAAGCCCAATTACTCAGAACCTGATGCAAAAGGAATACACATGTGAGGCCAGCTTGGGCAACTGGGACCTTGTCTCATAATAATAAAATAAAATATAAAAATTGGTGGAATATGGCACAATAGTAGGGTGTTTGTTCAATATGTTTAATGTCACGGGTTCTATCCACAGACTCAACATTAGGGGAAGGGATTCATCCTGGCAAAACCAAGACTATTGTAGCCCCTGCTCTTGCAGGAGACTTGGGACCTGATTAAGATAATTCAGAAACTCATGGCCATCTTTCCTAACCGATGCTTTTTTTTCTAGAAGTTCTATGTGGCCAGTGGAAGCTCCAGATAAAACTCTGGTCCTCATTTTTAAATGGTTGGTAGATCTAAGGACACCAACAGTGGCTGCTGGTGTGTGTAACACCACCTGGCCTCTCTGACAGCTGGTTTGATCTGCCAAGGGGTCCTTTGGGAGTGTTTGGTTAAGGTTGCTATGGGTGTGTTGAAACGGCACAACCAAAAGCAACTCGGAGGGGAGGAGGGCTAATTCGGCTTACATTTGGAAGTCCATCATTCCATCACTGAAGGAAGACAGGACAGGAACTCAAACAGCTGAAATCTGGCAGCAGGATCTGATGCAGACACCATGGAGAAGTGCTTCTTACGGGCTTGCTCCTCATGGCTTGCTCAGCCTGTTTTTTTGTTTTTTTGTTTTTTTTTTAATATAACACAGGACCACCACCCACAATGGGTTCAGCCCTCCCCCATCCATCCCTAATTAAGAAACTGTCCTACAGCCTTGCCTACAGCCATATGGAAGCATTTTCTTTCTTTCTTTTTTTTTTAATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCACTTCCCTACCCACCCATTCCCATTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGAGGTTCCCGCCTCTCAGATGACTTCAGCTTGTGTCACGTTCGCATAAAACCAGCCAGAACAGGAGTGCTCTTCAGAGAGCCCAGAATAGAACCCTGATTCTCAGTCTGTTTGACACTAGTGTTCCATTCAGGCCTGGAAAGCCTAAGGTCACAGGTCATTCTGTGTTTACTTCTTAGTTAGAGACTGAATGTGACATGTTAACCACGGGCTCGTGTATTTGAGGCTGTTGGTCCCCGGGTTGTAGTGCTGTGTTGGGAGGTTCTGGAAGGTTCAGAGGTTGGACCTAAATGGAAGAAGTAGGTCTTTGAGCGATAGACTTAGGTGAGTCAGTCCACTTCTGGCCACAGTCTCCATCCACTCACATTTCATACAGATAAGGACAGGTAGGCTCACCCTCCCGTCCGGTGCCTTCTACATGAGAAACCACTACACCTTAAACTGAGCCCAGACAAGCTTCTCCTCACACAGTTTCGAGCCAAATATTTGCTCACAACAAGACAAGTAGATAGCATGCTCTTTCTGCATTCTTCAAACCTTTAAACCTGAGAAACTGCCCCAGTGGGGTGAGTCTTAAAGGCTTCCAGAAGGACCTTAGCTGTAGAGTTTGCAGTCTCATTGGCTTCTGTTCACTCGGGCTTCCTTTTCTCTTCTTTTCTCCATCTGCTTCTGTGCCACCAG
Seq C2 exon
CCCAACAGATCTCAGAGTCAGAGTGGGAACCAATGACTTAACTACTTCACCCGTGGAACTAGAGGTCACCACCATAATCCGGCACAAAGGCTTTAAACGGCTGAACATGGACAACGACATTGCCTTGTTGCTGCTAGCCAAGCCCTTGACGTTCAATGAGCTGACGGTGCCCATCTGCCTTCCTCTCTGGCCCGCCCCTCCCAGCTGGCACGAATGCTGGGTGGCAGGATGGGGCGTAACCAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034623-Prss55:NM_001081063:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0008921=Trypsin=PU(21.1=73.8)

							
A:
NA

							
C2:
PF0008921=Trypsin=FE(36.6=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000086752





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000086752f3309A, ENSMUSP00000128485
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr8:10529700-10531294 
ALTERNATIVE
HsaINT0133039
(PRSS55)
Human
(hg19)
chr8:10387210-10388804 
ALTERNATIVE
HsaINT0133039
(PRSS55)
Rat
(rn6)
chr15:47436754-47438822 
ALTERNATIVE
RnoINT0118812
(Prss55)
Cow
(bosTau6)
chr8:8587822-8589668 
BtaINT0118798
(PRSS55)
Chicken
(galGal4)
chr3:106318873-106320096 
GgaINT0081155
([1])
Chicken
(galGal3)
chr3:109489380-109490603 
GgaINT0081155
(F1NFP2_CHICK)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"