RnoINT0118812 @ rn6
Intron Retention
Gene
ENSRNOG00000047258 | Prss55
Description
serine protease 55 [Source:RGD Symbol;Acc:1586875]
Coordinates
chr15:47436506-47439015:-
Coord C1 exon
chr15:47438823-47439015
Coord A exon
chr15:47436754-47438822
Coord C2 exon
chr15:47436506-47436753
Length
2069 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
GTCCGGTTCTGTGCCACCAGCCC
3' ss Score
5.24
Exon sequences
Seq C1 exon
AATGCGGTGTGAGACCCCTGTATGATAGCAGAATTGGACACTCCAGGATCATAGGAGGGCAGGAGGCTGAGGTGGGTGAATTCCCATGGCAGGTGAGCATTCAGGAAAATGACCATCATTTCTGCGGCGGCTCCATTCTCAGTGAGTGGTGGATACTCACCGTGGCCCACTGCTTTTATTCTCAGGAGCTTTC
Seq A exon
GTAAGTATTGAGGGCCCTCGGTCTCCAAGGGGTGGTGTGCACTCAGCTACACCGGGCTGGGAGAGGGACCTTGGTACAGTTGCCCCCTAGATAAACAGGAAAGGCTCCCCCCTCCCCTCGGGTCAGAAGACCCAAATGCAACTGACAGGGCTGGGGGGGCCTCTGCCCGTGTCTCCGAAGACATTAAAGTGCACCTAGGAGGAAATTCTACTTCTTCACATCTGACCTCCTTGGCTGGCTGTCATCCTTCTCCTTGGTGGCTTATGGAGATTTCTTTGTCCTAGGCCATTAACGGGCCATATGCCAAGGTCTTTCTTAGGACTTTTCTTAAATACTAATTCATTGCCTCTGCAATGACCTTTGGAGGGAGGTAGAAGAAATTATTTTGTAGATAGGGAAAGCAAGGTCTGATGAATGCCTATGGGTTGCCCCAGACCATGTCCAATAGACAAAAGCAGGAAGGAAAATCTGGCTTTTAACCTCACCCCTTCCAGAACGTTCAGAAACTGCAGGAAGGGGGAGCATAACCTGTAATTCTAGCTACTCAAAACCTGAAGCAAAAGCTATACACATTTGAGGCCAGCTTGGGCAATTGGGACCTGGTCTCATAATAATAAAATAAAATATAAAACTTGGTGGAATATGGCCCAATGACAGGGTGTTTGCACAACATGTTTAATGTCATGGGTTCTATCTGCACTCACCGTCAGGGGAGGGATTCATCATGGCAAAGCCAAGATTGCTGTGGCCCCTGCTCTTGCAGGAAACTTGGGACTTGGTTAAGATAATTAAGAAGCTCATGACCATCTTTCCTAACTGATGCTCTTTTCTGGAAGCTCTATGTGGCGAGTGGAAACTCCAGATGAAACTCTGGTCCTCATTTTTAAATGGTTGGAGGATCTGATGACACAAAGCAGTGGTTGTTGTTGTGCGTAACACTGCCCTGCCTCTCTGACAACTGGTTTGATCTGCTAAGGGGTCCTTTGGGAATGTTTGGTTAGGGTTACTACTGGTGTGTTGAAATGGTCTGGGGGAGGGGGTTATTCAGCTCTCACTTCCACATCAGTCCATCACTGAAAGAAGTCAGGACAGGAACTCAAATGGGGCTGAAATCTGGCAGCAAGAGTGGATGTGGACGCCATGGAGAAGTGCTGCTTATGGGCTTGCTAGGCCTGCTTTTATATACAACACAGACTACCACCCACAGTGGGTTTGGCCTCTCATCAATCCCTAATTAAGAAACTGCCCTACAGCCTTGCCTACAGCCATATGGAGGCATTTTCTTAACTGACTTCCGTCCCTCCTCTCATATGACTTAGCTTGTGTCAAGTTGACATAAAACTAGCCAGCACAGGAGTGCTCTTCAGAGAGCCCAGAATGGAACTCTGCTTCTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTGGAACTCTGCTTCTTGCCTGTTCACTGGTGTCCCATTCAGTCCTGGAAAGCCTAAGGACACGGCTCTACCCCCGCTCACTTCTCAGTTAGGGTCTGAATCTGACATGTTAACCACAGGTTCGTGTGTTTGAGCTCTTGCTCCCCTGGTTGTAGTCCTGTGCTGGGGGTTGTGGATGGTTCATAGGTTGGATCTAAATGGAAGAAAGGTCTTTGGGTGATGGATGTGGGGATTCAGTCCACTTCCAGCCACAGTCTCCAGTGGCTCACATTTCATACAAATAAGGACAGGCAGACTCATGCCTTGTCTTCTCCGCCATGTTCTACTCCTACATCTTAAACTGAGCCCAAGTAAGCTTCTCAGAGTTTCTAGCCAAATATTTGGTCCCAGCAAGAAAAGTAGATAGCATAGTCTTTCTGCATTCTTTAAACCTTTAAACCTGAGAAGCTGCCCCAGCGGGACAAGTCTTAAAGGCTTCTAGATGTTAGCTGTAGTTTCCAGTCCCATTGGCTTCTGTTCACCCAGGCTTCCTTCCTTTCTTCTTCTCTCCGTCCGGTTCTGTGCCACCAG
Seq C2 exon
CCCAACAGAACTCACAGTCAGAGTGGGAACCAATGACTTAACTACTTCACCCATGGAACTGCAGGTCACCAACATAATTCGGCACAAAGACTTTAAACGACACAGCATGGACAACGACATCGCCTTGCTGCTGCTGGCCAATCCCTTAACGTTCAATGAGCAGACAGTGCCCATCTGCATGCCCCTCCAGCCCACCCCTCCCAGCTGGCAGGAATGCTGGGTGGCAGGATGGGGCACAACCAACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047258:ENSRNOT00000072994:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.1=73.8)
A:
NA
C2:
PF0008921=Trypsin=FE(36.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]