RnoALTD0023761-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000047258 | Prss55
Description
serine protease 55 [Source:RGD Symbol;Acc:1586875]
Coordinates
chr15:47436506-47439015:-
Coord C1 exon
chr15:47438945-47439015
Coord A exon
chr15:47438924-47438944
Coord C2 exon
chr15:47436506-47436753
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTCCGGTTCTGTGCCACCAGCCC
3' ss Score
5.24
Exon sequences
Seq C1 exon
AATGCGGTGTGAGACCCCTGTATGATAGCAGAATTGGACACTCCAGGATCATAGGAGGGCAGGAGGCTGAG
Seq A exon
GTGGGTGAATTCCCATGGCAG
Seq C2 exon
CCCAACAGAACTCACAGTCAGAGTGGGAACCAATGACTTAACTACTTCACCCATGGAACTGCAGGTCACCAACATAATTCGGCACAAAGACTTTAAACGACACAGCATGGACAACGACATCGCCTTGCTGCTGCTGGCCAATCCCTTAACGTTCAATGAGCAGACAGTGCCCATCTGCATGCCCCTCCAGCCCACCCCTCCCAGCTGGCAGGAATGCTGGGTGGCAGGATGGGGCACAACCAACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047258-7-3,8-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.012
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0008921=Trypsin=FE(36.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGATCATAGGAGGGCAGG
R:
GTTGGTGACCTGCAGTTCCAT
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]