RnoALTA0031347-1/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000047258 | Prss55
Description
serine protease 55 [Source:RGD Symbol;Acc:1586875]
Coordinates
chr15:47436506-47439015:-
Coord C1 exon
chr15:47438823-47439015
Coord A exon
NA
Coord C2 exon
chr15:47436506-47436689
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
CTTCACCCATGGAACTGCAGGTC
3' ss Score
4.85
Exon sequences
Seq C1 exon
AATGCGGTGTGAGACCCCTGTATGATAGCAGAATTGGACACTCCAGGATCATAGGAGGGCAGGAGGCTGAGGTGGGTGAATTCCCATGGCAGGTGAGCATTCAGGAAAATGACCATCATTTCTGCGGCGGCTCCATTCTCAGTGAGTGGTGGATACTCACCGTGGCCCACTGCTTTTATTCTCAGGAGCTTTC
Seq A exon
NA
Seq C2 exon
GTCACCAACATAATTCGGCACAAAGACTTTAAACGACACAGCATGGACAACGACATCGCCTTGCTGCTGCTGGCCAATCCCTTAACGTTCAATGAGCAGACAGTGCCCATCTGCATGCCCCTCCAGCCCACCCCTCCCAGCTGGCAGGAATGCTGGGTGGCAGGATGGGGCACAACCAACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047258-9-5,9-4,9-3,9-2-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.1=73.8)
A:
NA
C2:
PF0008921=Trypsin=FE(36.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCATCATTTCTGCGGCG
R:
TGTCGTTGTCCATGCTGTGTC
Band lengths:
140-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]