RnoALTA0031347-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000047258 | Prss55
Description
serine protease 55 [Source:RGD Symbol;Acc:1586875]
Coordinates
chr15:47436506-47439015:-
Coord C1 exon
chr15:47438823-47439015
Coord A exon
chr15:47436690-47436753
Coord C2 exon
chr15:47436506-47436689
Length
64 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
GTCCGGTTCTGTGCCACCAGCCC
3' ss Score
5.24
Exon sequences
Seq C1 exon
AATGCGGTGTGAGACCCCTGTATGATAGCAGAATTGGACACTCCAGGATCATAGGAGGGCAGGAGGCTGAGGTGGGTGAATTCCCATGGCAGGTGAGCATTCAGGAAAATGACCATCATTTCTGCGGCGGCTCCATTCTCAGTGAGTGGTGGATACTCACCGTGGCCCACTGCTTTTATTCTCAGGAGCTTTC
Seq A exon
CCCAACAGAACTCACAGTCAGAGTGGGAACCAATGACTTAACTACTTCACCCATGGAACTGCAG
Seq C2 exon
GTCACCAACATAATTCGGCACAAAGACTTTAAACGACACAGCATGGACAACGACATCGCCTTGCTGCTGCTGGCCAATCCCTTAACGTTCAATGAGCAGACAGTGCCCATCTGCATGCCCCTCCAGCCCACCCCTCCCAGCTGGCAGGAATGCTGGGTGGCAGGATGGGGCACAACCAACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047258-9-5,9-4,9-3,9-2-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.1=73.8)
A:
NA
C2:
PF0008921=Trypsin=FE(36.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCATCATTTCTGCGGCG
R:
TGTCGTTGTCCATGCTGTGTC
Band lengths:
140-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]