BtaINT0118799 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034665 | PRSS55
Description
protease, serine, 55 [Source:HGNC Symbol;Acc:HGNC:30824]
Coordinates
chr8:8585898-8587821:-
Coord C1 exon
chr8:8587571-8587821
Coord A exon
chr8:8586041-8587570
Coord C2 exon
chr8:8585898-8586040
Length
1530 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGT
5' ss Score
10.49
3' ss Seq
GGGCCTTCTCCATGGTTCAGGTC
3' ss Score
6.83
Exon sequences
Seq C1 exon
GCCCACAGATCTGAGAGTCGTGCTGGGAACCAATAGCCTAACCAGCCCATCCCTGGAGATAAAGGGAGTCACAACCATCATTCGTCACAAGGACTTTCAAAGAGTCAGCATGGACAATGACATCGCTCTGCTGATGCTGGACAATCCCATCACGTTCAACGAGCTCAAAGAACCCATCTGCCTGCCCATGCAGCCCGGCCTCTCCCAGTGGCACAAATGCTGGGTGGCAGGATGGGGGCAGGTCAAATCCG
Seq A exon
GTACGTCACAGCTCAGCATCTCCTGGGTGCAGCCAGGGTAAGAGCCGCATCACTGGCATCTGAGGACGGGCCAGTAAACCTAGAGGAGAAGGCGAAAGAGACAGCGAGCTGAGGAAGCGGGGGCGGGGAGGGCTTGCCTCAGAGCTAATCCCTGAACACTAGAAACCCAGGGAGGCCTGATCTCAGCCTCTTCCAAGTTACCAAGGAAACAGCCCCCCCAACCCCCGCCAAGGCCCAGCGCTCGGATGCCAGGTGTGGGCCATCCCTGGGTGTGGTCCTCCCTTGCGAGCCAGCGCACAACCATCCTGTTGGCTTCACTGAATGCAAACCTCCAGCTTGCCAGGGGCTCCCTGCTCTGTCCTCTCTCATCTCCCTGATTCATGCGTGTATGCTTTCCACCTGATTCCTTCAGGCGTTCAAGACACCTGCCCTGGCCTAGACTTTAGATGGTCCTGGAGGGTTGCCCATCCATTCTTAGAAATGAATCTGTTCTTGCTACTTGTCAATACATTGTCACTTGGCCTCTCCTCCTGGAGGAGCTGGACCAGGGTACAAAGGGATCATGAAAGCCCCCACTGAACTGTCCCCAAAGAAAACTCAATAACATAGGTGTGGGAGGGGTGGGAACGGCACAGCACTAGCTCAGGCCTGAACAAGACTACAGGTCCTTGGGGGACGCTTTGCAACAAGTTGGGGTCTGAAACACGGTAGGTATTTCAGGAATTTAGTGACTGGAGGGTAATTGGTGTTAACACTGATTGAGGGCTTCAGACATGACTCAAAATTTAGAAGTGAGGAAGAGGCAGGTGGGTTCCTGCAAAATTAAGAATATGCAATAAGAATAAGACCTTTGAAATCTCCTTGTGGTTAGAGTTAATGAGATGGAGACAAATCCAGACAAATTCCTGGAAGCTGGCAGTCCAGGAAGGGCCTTGGCAAACCCCTTGTCCAGCCTGTCAACCACTGACAGAAAACAACAAAATTTTGTAAAGCAATTATCCTTCAATAGAAAAGTCATTAAATTAGAAAACAAAAAAGACTCTCAACCAACCTACCCTACCTTTGTCTGGGGGACCTGAGAGTTTCTCACTGAAAGCACAAACCCAGTTTCAGTGGCACTGCGTCAGAAGTGCCGTACTCACATAATAGAGGGGCAATAGGCAAACATGGCTTGAAGAGGTAGGATTATGTAAGAACTGATCAACAGCCAGTTCTAAGAAGTCAAATCGGTGGGGTTGCTGGAGCCAAGGTGGAAGTCTTCCTGGAGGCAGGAATAGGATTTTGAATGGGAGGAATGAAAAATTTAAATAGATGGGGACTTGTTTAGAAGAGCCTGGGCCGGTGGAATGAGTAAATTGCAAGGGATTACTAGAAGGATGTGGAGCATGAGGTTCTGTGAAAATGTGAAAAAAGGGTGGATGGGTGGCTGGTGGGATGCTGGGCAGGATGGCCTGGGGCCCACTCGGTTGCATTAGCAGCACTGGGGCTGGAGTCCAGTGACCATTGTAATGGGCCTTCTCCATGGTTCAG
Seq C2 exon
GTCTCAACCAGCCTATGGAAACTGAGCTGCTGAAAGCACCCATGACCATAATGAACTGGGATAAGTGTTTTAAGGAATTTCCCAAACTTACCAAAAACATGCTGTGTGCTGGATATGAGAATGAGAGCTACGATTCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034665:ENSBTAT00000049259:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATCCCTGGAGATAAAGG
R:
TGGCAAGAATCGTAGCTCTCA
Band lengths:
349-1879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]