MmuINT0127560 @ mm9
Intron Retention
Gene
ENSMUSG00000034623 | Prss55
Description
protease, serine, 55 [Source:MGI Symbol;Acc:MGI:1918287]
Coordinates
chr14:64695918-64698280:-
Coord C1 exon
chr14:64698033-64698280
Coord A exon
chr14:64696061-64698032
Coord C2 exon
chr14:64695918-64696060
Length
1972 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
GTGCTTTCTCTCTGTACCAGCTG
3' ss Score
8.79
Exon sequences
Seq C1 exon
CCCAACAGATCTCAGAGTCAGAGTGGGAACCAATGACTTAACTACTTCACCCGTGGAACTAGAGGTCACCACCATAATCCGGCACAAAGGCTTTAAACGGCTGAACATGGACAACGACATTGCCTTGTTGCTGCTAGCCAAGCCCTTGACGTTCAATGAGCTGACGGTGCCCATCTGCCTTCCTCTCTGGCCCGCCCCTCCCAGCTGGCACGAATGCTGGGTGGCAGGATGGGGCGTAACCAACTCAA
Seq A exon
GTATGTGATTGTACAGGGCCTCGTGGAAACTGCTGGGGCAAGAGCTACGGGATCTGGGGCAGCAATGAGGAAGGGCAAGACAGAGAGAGCAGTGGAATGGCTTTCAGTGGGGGAAATCTCCACACACTGGGATCTTGGGAGCCTCAGTTCAGTCTCTCCTGGGTGCCAGAGAGATGCTGCACCTGAGATGCCAGCTCTGAACCAATCCCTGGGTGTGGTCAACCAGCACAGAGTGGGTTGTGTTTGTGTGTGTTAATGGAATTTCAACCACCAGAGTTGTCCAAAGGCCCCTCTGTTCTATTCTTAGTTCTCACCAAGTAATGTCTCCTACCTGGTCCCTACAGGCTTTCATAATGCGCAGCCCTGGGCTTCTGAAGGTACTGTTACTCAACTACTTTTAGAAGTGTATGTTATCACTTACTACATGTTAGACTATTATTTGGTCAAAATAGAAAAACATGTGGAGCAGAATATGGGAGTAAATCCCCACTGCAGTGTCCCCAAAGATACCTCTGTCCCCAAAGACACCCCCCATCCTCAAAGACACCCCTGCAAGCAAAGCAGTTGGTAGGAGAGAGAGAGGGACTGCAGCCTAAAACTAAAGCAAGCCTTAGGCCCATGAAGACGCCTCGTATGAGCGGAGGCTGGATTTGGCTTCTCTTAGCATTTTAGTGGAAGGAGTCAGGTAGAGGATGGCTGCTGGCTCCAGACAGAACTTAGAAATGGCAAAGGAAGTGGAGAGTGACCTATGAGGTTAAAGCACTCTGTAAGAGAAATAATTACTCATATCTGTGATCAGAATTGAGAATCTTGCTAATGGAGGCCAAGACATTGGTTCCTGTCATCCCTCTTACACTAATTACTTTTGTATGAGACAGAGATATCTTCCAGAAACTTACGGCAAGAAAGGTTTGTTTGGGCTCCTGGTTTCAGGGATCTTAATCCACTGTATTGGGGAAGGCAGGGCTCAGGGGTAACAAGCATAGGGCAGAGACTGCCCACACTACAGTAGGACAGAGAGCAGATAACAGGACAGAACCAGGAACTAAGAATCACCTTCAAAGGCCTGCTCCTAGAGACCTACTTATACCAGCTGGGCCCCAGCCCCTAAAAGTTCCACAGCCTCCAAAATTAGCCCCATCCACTGAGAAACAAACGTTTAAAATGTGGATTTGCTGTGAGAGACATTTCAGATGCAAACAAGGCACCTTCTAGAGAACCAGCCAGGAGCTGGAGAAATGAATGGGTCAGCGGGTGTGCTGCATCTGCTCTTGCAGAGGGTCTGAGTTCAGGTCACAGATCCTGTGTTGAGAGGTTCACAACTGCCTGTATCTCCAGCCCCGGGGGATCTGCTGCCCTCTTCTGGCCTCTGTGGGCACTGACTCTGGTGTGCTTGTGCACACACAGATATATACACATACATATAATTTTTTGTTTTTAAGTTTAAATCTTTTAAAAAAGGCAATACAGCCAATCTATCAATGCTGGAAAACCAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTTGTTTGTTTGTTTTTTACTATGCTACAAATGGGTTTTCTGTGGCCCTGTAGCAGGGATGGGGCTAAGTGTGGAGGGCTGTGCTCACGTAATAAACAATAGTAATGGGAGGAGCTGGGAAATCCTCACCCGTGTGCTCCCAGGGAAGTCAAATCCTGGAGCTTGGTGAAGTCAGTCTGGAAGAAGACAGGCTCTGAATAAGAGAGCACTTGCGGGAGGCGGGGTTAATCAGAAAGGCTTATGTGATGATTGACGGCTCAAGGCACGGGCTGTCTGAAGGCTGTGGAAAACCGAGTCTGTGGGGAATACAAAGGAGAGTGGTTTGGGGCTTTGAAGGAGGGTCTGAAGCAGTCTCCAGGCCACCATCATGCTTCATTATCTGCGTAGAGACTGCCCACCTGGTAGCTTGTCTAATGTGCTTTCTCTCTGTACCAG
Seq C2 exon
CTGACAAGGAATCTATGTCAACGGATCTGATGAAGGTGCCCATGCGTATCATAGAGTGGGAGGAATGCTTACAGATGTTTCCCAGCCTCACCACAAACATGCTGTGTGCCTCATATGGTAATGAGAGCTACGATGCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034623-Prss55:NM_001081063:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCGTGGAACTAGAGGTC
R:
CTGGCAAGCATCGTAGCTCTC
Band lengths:
345-2317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: