RnoINT0118813 @ rn6
Intron Retention
Gene
ENSRNOG00000047258 | Prss55
Description
serine protease 55 [Source:RGD Symbol;Acc:1586875]
Coordinates
chr15:47434569-47436753:-
Coord C1 exon
chr15:47436506-47436753
Coord A exon
chr15:47434712-47436505
Coord C2 exon
chr15:47434569-47434711
Length
1794 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
GTGTTTTCTCTCCACACTAGCTG
3' ss Score
7.58
Exon sequences
Seq C1 exon
CCCAACAGAACTCACAGTCAGAGTGGGAACCAATGACTTAACTACTTCACCCATGGAACTGCAGGTCACCAACATAATTCGGCACAAAGACTTTAAACGACACAGCATGGACAACGACATCGCCTTGCTGCTGCTGGCCAATCCCTTAACGTTCAATGAGCAGACAGTGCCCATCTGCATGCCCCTCCAGCCCACCCCTCCCAGCTGGCAGGAATGCTGGGTGGCAGGATGGGGCACAACCAACTCGG
Seq A exon
GTATGTGGCTGTCCAGGCCCTCATGGAAACTGCTGGGACAAGAGCTACAGGATCTGGGGGAGTGGTGATGAAGGGCAGAGTGAGAGTGGTGGAATGGCTTTCAGTGAGGAAATCTCCACATGCTGGGCTCTTGGGAGCCTCAGCTCAGCCTCTTCTGGGTGCCAGAGAGATGCCAGGTCTGAACCAATCCCTGAGCATGGTCAGCACAGAGTGGGTTGTGTTTGTGTGTTTAATAGAATTCCAACCACCATAGTTGCTCAAAGACCCCTCTGTTCTATTCCTAGTGTTGCCCAATCACTCTTAGAAGTGAAAGTTATCACTTACTACTGTTAGGCTTTTACTTGGTCAAAATAGGAACCATATGTGGAGCGGAATATGGGAGCAAATTTCCACTGTACTGTTCTCAAAGACACCCCTTGTCCCCAAAGATACCCCCAACCCCAGCAGAGCAGTTGATAGAGACCGCAGCCTAAAGCTGAAGCAAGCCTCAGGCCTTGAAGATGACTTGTATGAGCTGAGCCTGGATTTGGCTTCTCTCAGCATTTTATCAGAGGGAGACAGATAGAGGATGGCTGCTGGCTCCAGACAGGACTTAGAAATGGTGAAGGAAGCAGACGGTGACCTACAAGGTTAAAGCACTCTGTAAGGGAAGTAATTATGAATTTCTGTGATCAGAGTTAAGAATCTTGCTAATGGAGGCCAAGACATTGGTTCCTGTCAACCCTTTTATACTAACTACTTTTGTATAAGACAAAAATATCTTCCAGAAACATGGCAAGAAAGGCTTATTTTGGCTCCCGGTTTCAGGGATCTTGGTCCATTGTATTGGGGAGGGCAGGGCATAGCAGCTCTAAGCCCAGGGGTAACAGCCTGCCCACACTACAGTAGGCCAGGGAGCAGATAACAGGACAGAATCAGGAACCGAGTCACCTTCAAAGATCTGCTCCTAGAGACCTACTTAAACCTCTTTGGCACCACCCCCTAAAAGTTCCACAGCCTCTAAAATTAGCCCCATTACCAAGAAACAAATGTTCAAAACAAGGATTTGCTGTAAGAGACATTTCAGATATAAACAAGCACCTTCTAAAGAACCAGCTGGGAACTGGAGAAATGGGTCAGTGGGTAAATTACATACTGCTCTTACAGAGGGTCTGTGTTCAGTTCCCTATCCTGTGTTCAGAGGTTCACAACTGCCTGTAACTCCAGCCCCAGGGGATCTGATGCCCTCTTCTGGCCTCTGTGGGCACTGACTTTCATGTGCTTGTGCCCAAACAGATATATACACATACATATAATTTTGTTTTAGTTTAAATCTTTTAAAAAAGACAATATGGGCAATCTATCAATGCTGGAAAACCAAATGATTTTTTTTACTATGCTATAAATGGGTTTTCAGTGGTTCTGTAGCAGGGATGGGGGCTAGATGTGGAGGACTGTGCTCACATAATAAACAATAGTAATTGGGAGGGCTGGGAAAGGCTCACTTGTGTGCTTCCTGGGGAAGTCAAATCCTGCAGCTTGGTGGAGTCAATCTTGAGGAAGACAGGCTCTGACTAAGAGGAACACTTGCAGGAGGTGGGCTTCATCAGAAAAGCTTATGTGGTGATTGACAGCTCAGGTATGGGCTGTCTAAAGGCTGTGGAAACTGAGTCTGTGGGGAATATGAAGGAGAACGGTTTTGGGCTTTGAAGGAGGGTCTGAAATGGTCTCCAGGCCACCATCATGCTTCATTACCTACACACACAGAGACTACCCACCTGGTAACTTGTCCACTGTGTTTTCTCTCCACACTAG
Seq C2 exon
CTGACAAAGAATCCATGAACATGGATCTGATGAAGGTGCCCATGCGCATTACAGATTGGAAGGAATGCTTACAGTTGTTTCCAAGCCTCACCACAAACATGCTGTGTGCTTCATATGGCAATGAGAGCTTCGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047258:ENSRNOT00000072994:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCCATGGAACTGCAGG
R:
AGGCATCGAAGCTCTCATTGC
Band lengths:
342-2136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]