BtaINT0118803 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021616 | PRSS57
Description
protease, serine, 57 [Source:HGNC Symbol;Acc:HGNC:31397]
Coordinates
chr7:44907646-44908820:-
Coord C1 exon
chr7:44908667-44908820
Coord A exon
chr7:44907791-44908666
Coord C2 exon
chr7:44907646-44907790
Length
876 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
CCCGCCCATTCCCCCCACAGAGA
3' ss Score
11.32
Exon sequences
Seq C1 exon
GCTCCTGGGGGGCACAGATCATTGGGGGCCACGAGGTGACCCCCCACTCCCGGCCCTATATGGCATCCGTGAAGTTCCAGGGCCAGCACCACTGCGGGGGCTTCCTGCTGAGGGCCCGCTGGGTTGTGTCGGCTGCCCACTGCTTCAGCGGCCG
Seq A exon
GTGAGCCTGGGATGAGGGCATGTACTGGTGTGGGCAGGGGGGTGGAGGGGGGCTTGTGCAGATGGGCCTCTCAGCTGGGCAGGGGGAGTTAACAGAGAAAAAGGGGCAGGAGAAGTAGGGAAGGACCGGCAGCCATGACCATAAGCAGAGGTTACAACCGTTGCATTCATCCTGAGTGTGTGCTTGCATGCATACTAAGTCGCTTCAGTCGTGTCTGACTCTTTGAGACTCCACGGATTGTAGCCCATCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAGGAATACTGGAGCGGGTTGCCATGCCCTTCTCCAGGGGATCATCCCAACCCAGGGATCGAATCGCAGTCTTTCACGTCTCCTGCATTGGCAGGCGGGTTCTTTACCACTAGCGCCATCTGGGAAGCCCTCATTCTGAGTATATTGATACAATAATTACTAACATTAATATTGAAATTATTAGAGGCAATGCTATAATCCAGATGGGAATTAGAATAAATATAATGAGTGTTATATTCATTTGAAGTATAATGTTATAATAAGTATTCAAATTAATAGTGCAGCAGGACTCCCCTGGTGATCCGGTGGTTAGGACTCCACACTTTCACTGCAGGGGCCATGGGTTTGATCCCTGGTTGGGGGACTAAGATGCCACATCTAATATGGAGTGGTCAAAAAAAAAATATATATATATATATATTGCAGCAATTGGAGTTAATACCATAATTGAGACGGGAGGGTGATCAACTCAACATTTATCATCACAAGCTGGCAGGAGGATGGCATGGGCTTACTTCCCAGGAGGCGAGAGACTGAGCCTGTGTGAGACAGCCCTCACCTCAGCCTTGCTCACATTCCCCGCCCATTCCCCCCACAG
Seq C2 exon
AGACCCCGGGACAGGCCTGGTAGTGCTGGGGGCCCATGCCTTGCGCACCAAGGAGGCCACACAGCAGGTGTTCAGCATCTCCGCTGTCATCACACACCCAGACTACCAGCCCACCACGCACACCAGTGACATCTGTCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021616:ENSBTAT00000039232:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=86.5)
A:
NA
C2:
PF0008921=Trypsin=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGATCATTGGGGGCCAC
R:
GACAGATGTCACTGGTGTGCG
Band lengths:
279-1155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]