MmuINT0127568 @ mm9
Intron Retention
Gene
ENSMUSG00000020323 | Prssl1
Description
protease, serine 57 [Source:MGI Symbol;Acc:MGI:1920356]
Coordinates
chr10:79248500-79250256:-
Coord C1 exon
chr10:79250103-79250256
Coord A exon
chr10:79248645-79250102
Coord C2 exon
chr10:79248500-79248644
Length
1458 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TTCCTCTTGTTGGCCTGCAGGGA
3' ss Score
9.6
Exon sequences
Seq C1 exon
GTTGCTGTGGGTCCTACATTGTTGGAGGCCATGAGGTAACGCCACATTCCCGGCCCTATATGGCCTCTGTGAGCTTCGAGGGCCATCACTACTGTGGAGGCTTCCTGATTCATACCCATTGGGTGGTGTCAGCTGCCCATTGCTTCAGTGACAG
Seq A exon
GTGACATGCTGGGGCCACTGAGGGATAAACTTAAGGCCATCAGGAAGCCAGGATGTGACACAGACAGGACCAACTCTCTACCCCCACGCCCGGGCACTTCTGGTGATAACAATCAAACATAATAACTATGATCATCTTCGACACAAGCGACATGTGCTACTGTTTGGACTCACATTAACTGTGGGGAGAGCAGCACAGTCCGGGGACTCCAGCTACCCAGAGGCTGGCTCAGGGGGATGGAAAAATGAAGCTCAGTGTTAGCTACAGTCTGGAACCATGTCTCCATAGGCAGACAGACAGACAGTTATAGGATAGTAGTTAAATAGTAGAGGTCTTAACTGGAGTGTGGCTCAGGGATGGAGCCCCGCATAGAATCCCCAAGTGAGAGTCTGGGGGTGTTGCCCATTTGTGGAGCCCTTGCCTAGAACCCTCAGTGAGGGGTGGGGATGGGGTCAGGTAGAGTGCTTGCTCAGTGAGAAGCATGAGGTTTTTAGGGTTGTTTGGTTTTTTTTAAGATTTATTTATTTTAAATTCACTTTTCTTTTTTAAAGATTTATTATTTATCTTATGCACGTGAGTACACTGGAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTTTTAACCACTGAGCCATCTCTCTAGCCCCTTAAATTCTTTTTTTTTAAAAGATGTATTTTATTTATTTATTTATTTATTTATTTTGGGTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGGTTGTGCCACCACTGCCTGGCTGTTTATTTATTTTTATGTACATGAGTACACCGCTGCTCTCTTCAGACACACTAGAAGAGGGCCCTGGATCCCATTACAGATGTGTGGTTGCTGGGAATTGAACTCAGGACCTCCAGAAGAGCAGTCAGTGGTCTTAACTGCTGAGTCATCTCTCCAGCCTGGGAGGTTTTTGAGTTTTATACTCAGTGCTACAAAATAGTATTATGGCTGGGCGCAGTGGCGTACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAACTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAAAAATAGTATTATGGAATTAAGAATTATAACAAATAAGGTTTATTGTATTCCATTTAAGCTTATTTTTATAACTCTGGAAGTTAATACTGCAAGGACTGGAGGCTGCCTGGAGAGGGTGGGGTTGTATGACCTCATGACTTCAGGGCAGTCTTGGTGACTTTGTTCCTCTTGTTGGCCTGCAG
Seq C2 exon
GGACCCCTCCATGGGGCTGGTGGTGCTGGGGGCCCACGCACTGCTCGCCCCAGAGCCCACACAGCAGACATTTAGCATTGCAGCTGCTGTCAGCCATCCTGATTTCCAGCCTGCCACACAGGCCAACGATATCTGCCTGCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020323-Prssl1:NM_001042710:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=86.5)
A:
NA
C2:
PF0008921=Trypsin=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGTGGGTCCTACATTGT
R:
TAGCAGGCAGATATCGTTGGC
Band lengths:
296-1754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: