RnoINT0118828 @ rn6
Intron Retention
Gene
ENSRNOG00000025293 | Prss57
Description
serine protease 57 [Source:RGD Symbol;Acc:1303330]
Coordinates
chr7:12800464-12802137:+
Coord C1 exon
chr7:12800464-12800617
Coord A exon
chr7:12800618-12801992
Coord C2 exon
chr7:12801993-12802137
Length
1375 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
CTCTTCCTGTTTGCCCGCAGGGA
3' ss Score
13.02
Exon sequences
Seq C1 exon
GTTGCTGCGGATCCCACATTGTTGGAGGCCATGAGGTGAAGCCACATGCCCGGCCCTACATGGCCTCTGTGAACTTCGAGGGCCATCACCATTGTGGAGGCTTCTTGTTCCATGCCCATTGGGTGCTGTCAGCTGCCCATTGCTTCAGTGACAG
Seq A exon
GTGACATGCTGGGGCCACTGAGGGATAAACTTAAGGCCATCAGGAAGCCAGGATGTGACACAGACAGGACCAACTCTCTGCCCCCGCCCCCGGCACTTCTGGTGATAACAATCAAATATAATAACTGTGATCATCTTCAAACAAGCAAAGTGTGCTACTGTTTGGACTCAGACTAACTGCTGGGAACGACAGCACAGTCTGGGAATTCCAGTTAGCCAGAAGGCTGAGTCAGGGGGACGGAAAATTGAAGCTCAGTTAATCTGGAACCATGTCTCAACAGACAGACAGATGGATGGACGGACAGACAGATAGTTGTAGGATTGGAGTTGAATAGTAGAGCCCCTAACTGGAATGTGGCTCAGGAATGGAGCCCCACATAGAATTCCCCAGAGTCTGGAGCTGTTACCCCTTTGTGAGTTCCACCACCCAGAATCCCTCAGTGAGGGGCTGGGGGCGTGGTCATGGGCATGGGGCTCTGTCTAGAATCCCCCAGTGAGGGGCTGGGTGTGATTAGGGGTGGAGCCCCTGCCTAGAATTCCCCAGTGAAGGGCTGGGGTTGTGATCAGTTAGAGCACTTGCTTCGTGAGAATCTTGACGGTTTTCTTTTTTCTTTTTTTTTCTTTTTCCGGAGCTGAGGATCGAACCTAGGGCCTTGCGCCTGCTAGGCAAGCGCTCCACCGCTGAGCTAAACCCCCAACCTGACGGTTTTATTTATAAATATATATATTTTAAGATTTATTTATTTTTAACTTCTGTTTTTTGTTTTTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGTGCTCTACTGCTGAGCTAAATCCCCAACCCCTTAATTTCTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAACTTCTTTTTAAAATAAGATTTATTTATTTATTTTATGTATGTGAGTACACTGTCACTGTCTTCAGACACACCAGAAGAGAGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAAGAACTCTGAGTCATCTCTCCAGCCCCCGGGGTTTTTAGTTTTATACTCACTACTACAAAATAGTACTATGGAATTAAGAATTATAACTAATAAGGTTGTATTGTGTTTATGTGCATTTTTATAACTCTGAAAGGTAACATTGCAAGGACTGGAGGCTGCTGTACTGGGAGAGGACTGTAAACCTGGGGACGGAGGGGTCTATGCACTCATGACTTCAGGGCACTCTTGATGACTTTGCTCTTCCTGTTTGCCCGCAG
Seq C2 exon
GGACCCCTCCACTGGCCTGGTGGTGCTTGGGGCCCATGCCCTGCTCACCCCGGAGCCCACACAACAGGTATTTGGCATTGCGGCTGTTGTCAGCCATCCTGATTTTGAGCCGACCACACAGGCCAATGACATCTGCCTGCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025293:ENSRNOT00000038553:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=86.5)
A:
NA
C2:
PF0008921=Trypsin=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGCGGATCCCACATTG
R:
TAGCAGGCAGATGTCATTGGC
Band lengths:
295-1670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]