BtaINT0119265 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016952 | PSMD5
Description
Bos taurus proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 (PSMD5), mRNA. [Source:RefSeq mRNA;Acc:NM_001075693]
Coordinates
chr8:112103246-112107243:-
Coord C1 exon
chr8:112107134-112107243
Coord A exon
chr8:112103389-112107133
Coord C2 exon
chr8:112103246-112103388
Length
3745 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GCAAAACCTTGGCATTTCAGAGC
3' ss Score
3.13
Exon sequences
Seq C1 exon
CTGATTGTGGAGATCTCTTCTGTGTCACCAGAGTCTCTGAACTGCTGTACCACCAGTGGGTTGGTAACCCAGCTCCTCCGAGAACTGACTGGTGAGGATGTGCTGGTCAG
Seq A exon
GTATGTTGATGGAGGAAGTTCTTAAAGCAGAATGTCCTCTTCTGGAGGGCCAGGAGACAACCTCAGGACTTAGCATGACCTCCCCTGCCTGGATCCTATGCTCAGGTTGCAGTCTCCTGACTGATGTATGTCCTGAAGGAGGGGCGTTTAGAACACGGCTGACCTTACGCAATCACAACATACTGGAACTTAGCAAAGCCGTTCATGACAGTTTAGCTCCTTTTGAATGACTGTTCCCTGTCCTTAGGCCTGTGTGCGCTTTAGAAGGTGCCAACCACATGGCAACTGTCATTTTGTATTGCTTAACATGTTAGCATGCACATGGGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGAGCATGCACGCATATATGGTGGTTCAGTCACTAAGTTGTGTCCCACTCTTTTGTGACCCCATGGACTATAGCCTTCCAGGCTCCTCTGTCCATGGAATTTCCCAGGCAAGAACACTGGCGTGGGTTGCCATTTCCTTCTCCATGGGATCTTCCCGATCCAGGGACTGAACCTGAGTCTCCTGCATTGATGGGTGAATTCTTAACCACCGTACCACCAGGGAAAGTAAAGTGAAAGTCACTCAGTTGTGTCTGATTCTTGGTAACCCCATGGACTATAGTCCACTAGGCTTCTCTGTCCATTGAATTCTCCAGACAAGAATATTGGAGTGGGTAGCCACATCTTTCTCCAGGGATCTTCCCGACCCAGGGATCGAACCCAGATTTTTTGCATTGCAGGTAGATTCTTTACTGTCTGGGCCACCAGGGACTCCATGTGCATGTCTATATATTTTCTTTGTTTGTTTGCCTCTTTTGGCCATGCTGTGCAGCTCGTGGAATCTCAGTTACCTGACCAGGGATTGAACCCAGGCCCTAGGCTGTGAAAGTGCTGACTCGTAACTACTGGACTAACAGAGAATTCCCGACACGCATATGTTTTGATATTGTTAAGTAATAGCACTACAGCATGACAGAATAAAACTTGGGACTCTTAAAAATGAGGGAGAGACTTGGTTTGCATGCATCTCTACTACTTAGTAGCTGTTCGACCTTAGATTATTGTAACCTTTCTGGACCTGAGTTTTCCTCATCTCCTTGATGACAACAACATGTATGCCAGCAAATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACCGCACAATTGCACTCATCTCACACGCTAGCAAAGTAATGCCCAAAAATTCTCCAAGCCAGGCTTCAGCAATACGTGAACTATGAACTTCCAGATGTTCAGTTCAGTCGCTCAGTCATGTCCGACTCTTTGCGACCCCATGAATTGCAGCACGCCAGGCCTCCCTGTCCACCACCAACTCCCGGAGTTCACTCAAACTCAACATCCATCAAGTCGGTGATGCCATCCAGCCATCTCATCCTCTTTTGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCATTGAGTCAACTCTTTGCATGAGGTGGCCAAAGTACTGGAGCTTCAGCCTTAGCATCATTCCTTGCAAAGAACAAGCTGGTTTCAAAAAAGGAAGAGGAACCAGAGATCAAATTGCCAACATCTGATGGATCATCGAAAAAGCAAGAGAGTTGCAGAAAAATATCTATTTCTGCCTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGAAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGACTCTTGAGAAACCTGTATGCAGGTCAGGAAGCAACAGTTAAAACTGGACATGGAACAACAGATTGGTTCCAAATAGGAAAAGGAGTACGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATTCAGACTGCATCATGAGAAATGCTGGGCTGGAGGAAGCACAAGCTGGAATCGAGATTGCCGGGAGAAATATCAATAACCTCAGATATGCAGATGACACTACCCTCATGGCAGAAAGTGAAGAAGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGCTGGCTTAAAGCTCAACATTCAGAAAACGAAGATCATGGCATCTGGTCCCATCACTTCATGGCAAATAAATGGGGAAACAGTGGAAACAGTGGCTGAATCTTTGTTTGGGTTCCAGAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGAAAAGTTATAAACAACCTAGACAGCATATTAAAAAGCAGAGATATTACTTTGTCAACAAAGGTTTGTCTAGTAGTCAAGGCTATGGTTTTTCCAGTGGTCATGTATGGATGTGAGAGTTGGACTATAAAGAAAGCTGATTACCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATCCTAAAGGAGATCAGTCCTGAGTGTTCATTGGAAGGACTGATGTTGAAGCTGAAACTCAATACCTTGGCTGCCTCATGCGAAGAGCTGACCCATTTGAAAAGACTGATGCTGGGAAAGATTGAGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGTTGGATGGCATCACTGACTCAATGGACATGAGTTTGGGTAGACTCCAGGAGTTGGTGATGGACAGGAAGGCCTGGCGTGCTGCAGTCCATGGGGTCGCAAAGAGTCGGACACGACTGAGTGAACTGAACTGAACTTGATGACAACTCTGTAAATGTTGTCATTTACAACATTAAATGTCAATGACAACTCTGAAAATGAGGATTAAGTGAATTAACCATAGAGACCAGTACAATGGCTGATACAGGCTCTATATTGAGAAATGTTAATTCCAGTCTCTATTCCCAGCTCCCTACTCCTCCCTGAGTCCCCTTTGATATCTGCCAAGTGTTGCCTTGGATAGTCCACAGTTTACCAGTACCTCCTCACTCTTAAACACTTGGTTTGTTTCAAATATTTTGCTATTATAAGAGTACTATAGTTACCTTTGTGTACACAAGACTTTGTTTTCCTTTTCTTAAATGATTTTCTGATTGTCCTCTGTTCTTTAAATGTGACTGAATTTGTTAAACTCACATGTATAAGCCAGTCCTCAGTTAACCCTGTCTCAAAGCATTGGAGTTACATTGTTTCAGAGCTTTCACAATAAGGAAATTATTTTGTTAAGTTTCTTTAACTTAGTATCAGAGTTAGTGACATAGGAAAAAAACTTGCAAGTAGTCAGTTAATATACCTTAGGATCAGCTATAAAAATACTTGTTTTAGTTAATTGAGGAAATTCGTTCATGGTTAGGCTTTAAATGATACCAAAGAATTATTTTTTAAATATGTGGTAGAGGTAATTGTGTTAAAAAAAAGTCATGTTTGACATTTCAAAGTAAAATACAGGTTTAGAAACTCTTTGAGGAGGGTTGTGTCATAATGGAAACAAGCAGCAGCTGTGGGCCTTGAATCAGAAGAGCTCGGTTTGAGTCATAACTGTCTTGGAAAAACAGTACGATTGTGATTCTGGACAAGTTACAATTTTCTCATCCTTCTGTCCTCATCTGAAAAGGAGATCCAGGATCATTGACCTTTCACGTTTGGTGGGAAGAATTAAATAACCTGTATGAAAACAGTTTATAAACTGTCAGTCACATGCAAAACCTTGGCATTTCAG
Seq C2 exon
AGCCACCTGTATAGAAATGGTGACATCGCTGGCCTGTACTCATCATGGACGACAGTACCTTGCTCAAGAAGGAGTCATTGATCAGATTTCTAACATAATTGTTGGGGCAGATGCAGACCCTTTCTCTAGCTTCTATTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016952:ENSBTAT00000022548:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(7.1=100)
A:
NA
C2:
PF105084=Proteasom_PSMB=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]