HsaINT0133600 @ hg19
Intron Retention
Gene
ENSG00000095261 | PSMD5
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:HGNC Symbol;Acc:9563]
Coordinates
chr9:123589043-123591486:-
Coord C1 exon
chr9:123591377-123591486
Coord A exon
chr9:123589186-123591376
Coord C2 exon
chr9:123589043-123589185
Length
2191 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TTGTCCTTCTGACATTTTAGAGC
3' ss Score
7.84
Exon sequences
Seq C1 exon
CTAATTATAGAGATTTCTTCCGTGTCACCAGAATCTTTAAACTACTGTACCACAAGTGGATTGGTAACCCAGCTCCTGAGAGAGCTGACTGGTGAGGATGTGTTGGTCAG
Seq A exon
GTGTGTTGACTGAGTTCTTAAAGTGAAATATCCTCTTTTGAAGGGCTGGGAAACAACCTTGGGACATCTGTGATTTTCTCTATTAGAGACTTTGCCCAGGTTGCAATCTCATGACTGATGTGTGTCCTGAAGGAGGGATCTTTAGAAAATTGTTCAAGTTACATCGTGACAACATACTGGAACTTGGGAAAGCCCCACATGACAATTCAGCTACTTTCAAGTGACTCTGTTCCATGTCCCTAGGCCTGTGTGCTCTTAAAAAGTTGCAATCATGTGGTAACTGCCATTTTGAATTACTAATATTTTATCATATTCATTTATTTTGGCATTGTTAAATAGCAACACTATGGCATGATAGAAAAAACATGGGCTAGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGATTCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTGAAACCCTGTCCCTACTAAAAATACAAAAATTAGCTGGGTATGGTGGCATGTGCCTATATTCCCAGCTACTCAGGAGGCTGAGGAAGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCACCACTGTACTCCAGCCTGGGCAACAGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAGAATATGAGCTTTTCAAAATGAGGAAGACTTGGCTTGCATGCCTCTCTACTATTTATTAGCTGTTTGGCCTTGGACAGATAATTATAAGCTTTCTACATCTCAGTTTCCTCATCTCTCAGAACAGTAACTAAAAAAGATATTGTGCCAGGTGCAGTGGCTCACAGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGATGGATTACCTGAGGTCAGGAATTCAGGACCAGCCTGGCCAATACGGTGAAACCCTGTCTCTACTAAAAAAATACAAAAAATTAGCTGGGCGTGGTGGTGGGTGCCTGTAATCCTAGCTACTGGGAAGGCTGAGACAAGAGAATTGCTTAAACCCGGGAGGTGAAGATTGCAGGGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCGTCTCAAAAAAAATAAAAAGATATTGTAAGAATTAAGCTAATTGACCATAGAAAGCAGTACAATGGCTGACATAGGTTCTCAAAGAAATGTTAATTCCAGTCTCTTCCACCCGCTATTCCCTAAATCCCCTTTAATATCTGCCAAATGTTCTTTTGTTGATATTCCACAGTTTACTAATACCTCCTCACTGTTGAACAGTTGATTTGCTTCAAGTATTTTGCTGTTATGATAGCATTATAGTTATCTTTGTGTATATAGGTTTTGATTTTTCTTATCTTAAATGATTTTCTGATTGTCCTGTGTTCTTTAAACATGGCTGAATTTATTAAACCCATATGAGTAAATCAGTCACTAGTTACATTGCTTCAGTGCATTTGAGTGTCTCAACCTAATGAGACAATTAATTTTGTTAATTATTTTTTAGCATTGTATCAAATTTTGTGACATAGAAAAAAACCTGTAAATGGTCAGTCAAAACAGTTTAGGATCAACCACCAACTAAATAAATTTTTTAGTTATTTTCTTTGATCATGGTTGGATATGAGATGATACCAAAGAATTATTGTTAATTTCTTAATATGTGGCAGTGGCATTATAATTGTGTAAGGAAACATATGTGTTTTGTAGAGATGCATACTAAAGTATGCAGGGGTAAATGGCAGGGTGACTAGGATTTGCTTTAAAATAGTTCAGCAAAAAGTAGGGAAAAGAGATGAAATAAGTAAAGCAAAATCTTCATAACCATAAAATCAGGTTATGTGTATATGGGGGCTTATTGTATTCTCATTACTTTTGTGTATGATATTTCAAAATAAAACACAAATTTAGAAAATATTTTAGGAAGCAGCTAGGTTATAGTGGAAACAATAGTGGACTTCAAATCAGAAGGTCAAGATTTAAATCTAAACTCTGCCTATAATAACAATATGATTACAGAGAAGTCACTGCAAATTTCTAGGCCTTAGGGCTTCATGTGAAAAGAGGAGCCAAGATTATTGACCTTTCGAATGTGATAAGAAGAATTAAATAAGATAACCTGTATGAGAGCAATTTATAAACTATGCAAATCCTGTGCAAAATCTCCTTGTTTTTGTCCTTCTGACATTTTAG
Seq C2 exon
AGCCACCTGTATAGAAATGGTGACATCACTGGCATATACTCATCATGGGCGACAATATCTTGCTCAAGAAGGAGTAATTGACCAAATTTCTAATATAATTGTTGGGGCAGATTCAGACCCTTTCTCTAGCTTCTATCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095261-PSMD5:NM_005047:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(11.3=100)
A:
NA
C2:
PF105084=Proteasom_PSMB=PU(37.2=97.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)