MmuINT0128108 @ mm10
Intron Retention
Gene
ENSMUSG00000026869 | Psmd5
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:MGI Symbol;Acc:MGI:1914248]
Coordinates
chr2:34860632-34863566:-
Coord C1 exon
chr2:34863457-34863566
Coord A exon
chr2:34860775-34863456
Coord C2 exon
chr2:34860632-34860774
Length
2682 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTGTCCTTTTTGACTTTAGAGC
3' ss Score
8.94
Exon sequences
Seq C1 exon
CTAATTATAGATATTTCTTCTGTGTCATCAGAATCTTTAAACTACTGTACCACAAGTGGACTGGTGACTCAACTCCTAAAAGAGCTGACGGGTGAGGACGTGTTAGTCAG
Seq A exon
GTAAGTAGAGTTGGGAGACTTCTTCAAGTGAAATGCCCTTTTTTTAGGGCCACAAAGCAAGTGTGGGTCTTAGTGTAGTCTTCTGTGCTGGTGGATCCTATACAGCTGTGATCTCAGGGCTGGTGTTACTTTCAAGAAGCATTTTAGGAAATGGCTTTTTTATCATGATAATACATTTAGCTTTGCAAAGTCCTGCAAGATGTCTTAGTTATTTTTCAAATGACTATATCCTCTGTCTCAAAGTTTGCTCTTTGATTAATATGTTACAATATGTAATTTAAACAGTCATGAATCACTTTGATATAGGCCATTTTAGATGACTTAGCATCTTACCAAGTTGCATTATCAAATAGCTCTATGATATGATAGAAGAAATACCGTGTTTTAAAAAGAATGAAGATTTGCTGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATCTCTGAGTTTGAGACCAGCCTGGTCTACAAAGGGAGTTCCAGGACAGCCAAGGCTACACAGAAAAGCTGTCTCGAAAAAACAAAAAAAGAATGAAGACATGAGCTTCATAGCTCTTAGACCTCTACCCGTTTGGCCTTGGACAAATGACTATAGCATTTCTGTACCCAGTTTCTTTTTCTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGTGTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCAGTTTCTTTTCCTTTTGCTGCAGTATTAGGGATTGAACTCAGGACTTACACATCAGGCAATCACTCTACCACTGAGCTATATCCCTATGCCGTTTACTTTCTTATTTTGAGATAGGGTCTCACCTAGATGCCCAGGCTGGCTTTGAGCGCACATGTAATCCAGGCAAGCCTTGAACTTATGATCCTCCTGTATCAGCCTCTGGGACTATGTCTGACATCCATGACTGAGAACAATAATAATTCTATAAAGACTATATGAGGATTAAACAAATTAGCCATACAAACCAATATAATGGCTCACAAGGGTCCTTGCTGAGTGTTAGCTGTGTCTCTTAGAGCTCCTGTTGTTCCTACTCCCAGGTCCTCTTAATATTGCCCAGTGTTTGCTCTACTCATCTACACTCTCTGCCTTTGCTGTTATGATAGCATGGTAATCGCCATCTTTGTATATAGATATTTCCGGTATTTAATGACTTTATGGTTGTCTTTCTTTTGTAGTATGACTGGATTTGTTAAATCCATATATATACATTGGTTACTGGGTCCTTTTTTTTTTTTTTTTTTAATTTTTTTTGAGACAGTGTTGCCCTGGCTGTCCTCGAACTCACAGAGCTCTACCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCGAGTGCTAGGATTAAAGGTCTGTGCTACCACCACAGTGTCACTTTGTACTTATTTGCATTTTCATATTTTAATCGAATGAACAAGGACATAGATAAATCTGAAGAGGTCAGGTGCCAGGTTTAACCTCAGCTAAACTGTGTTAGTTACTTATCGTGACTGCATGCCAGAAGGGACTGAAGAATTACTATTATGCGGTGGTTACTATATGAGAAAGTGTTGCTGCTTTTACAGACATAGGTGGGGTAAATGCAAGATGTTGAGCCTTCTTTAGAATAGCTCAGTGGAAGATTAGATAAAACGTTGGTAATTCTAAAAACAGTTACTGGTGCACGGGGACTCATGCAGCTTTGGTTTTGTGTCTGTTTGGTATTTCAAAATAAAACAAATTATTTTTTTAAAAAAACCTCTTAAGAAACAAGTATGTTACAGAAATAGTATTGGGTCTCCAGTTAGAAGGTCAGGCCTCAGATCTGAGCTCCACCTTAATAAGCTTGGAAAATGATAGTGCTCTTGTATCCTCATCTGAAGAAGGAGCCAGACTATGGGCCTTTCAGATTTGATGAGAATAATTAAATATAATAGACCCCATGTGAAATCAGTTTTAAAATGCTCTTCATTTTTGTCCTTTTTGACTTTAG
Seq C2 exon
AGCCACCTGTATAGAAATGGTGACATCACTAGCTTATACCCATCACGGACGACAATACCTTGCTCAAGAAGGAGTCATTGACCAGATATCCAATATAATTGTTGGCGCAGATTCAGACCCTTTCTCTGGCTTCTATCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026869:ENSMUST00000028225:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(7.1=100)
A:
NA
C2:
PF105084=Proteasom_PSMB=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types