BtaINT0120931 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014313 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr26:19335029-19336803:-
Coord C1 exon
chr26:19336697-19336803
Coord A exon
chr26:19335150-19336696
Coord C2 exon
chr26:19335029-19335149
Length
1547 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTACAGCCCTGCCTCTGCAGAAC
3' ss Score
6.31
Exon sequences
Seq C1 exon
TGTTTGATTGCATCGAGGCCTACGCACCCGGCTTCAAGGGCTCCGTGGTGGGCAGAGACATCCTCACACCCCCTGACTTGGAGAGAGTCTTTGGGCTTCCTGGGGGG
Seq A exon
GTGAGTTCGTATAGGACGGGAGGCTCTCGTCACACTCTGCCTTCACTCTCTTTGCACCTCCACTCCCTGACATGCCCACTTGGCTTTATCTTGGCCCTCCACACCCAGCCTTAGGCAGGAAGGGAGGACAGGGGCAGAGACCACAGCGGAGAGAGGACAGAGACAGGGTCAGTTGCAGGCAGTGGGGGAGGAGAGAAGAGATGTAGACGGGAGAGGCAGCGCCCACTGGAGAGATCACCTTACTGTGGGATTTCCGCCCAGACGTCCACATCAGCATCTCCCATCTGCCTTTCTTCAGAGGGGCCTCCCCTCCCCTGAGCAGCTTGATCTCACACTTCTCTTCAATTTATCAACAACTCACTGAGCCTGGAGGCAGGGAGTGGGTAGGCCACCAGAGCCAGTATGGCAGCGACTAGCTCCGATTGGCCATTGCGTACGTAGACGTGGCCAGGCCAACGTGAGATGTGTTTCAATATAAAATGCACCCCAGATAGCAAAGACAAAAAAAATGCAGCAAGTCTCATCAATAATTTTAATATCGACCACATGTTGAAATGATATTTTGGATCTGTGGGGTTAAATTAAACATATTATTTAATTGGGTTAAATTAAATGTATTATTAACACTAATTTCACCAGTTTCTTTTTAAGTGTTCATGTGGCTAATGGAAAATCTAAAAGTACATGTGTAGCTCCAGTTATATTTTTATCAGACAGCATAGGCTGGCTAGAGAGTGAAGGAGGCCAGGCAGTGGAGAGGGAAGGGAAAGGGTTGAGGTGGAAGGCTTGGGGCAGGTGGATTGAGACATCTTGATAAACGCATGTGTAGAGAGGGGGCTGGAGGGGATGTAAAGGGTCCACCTGGAGGCCGAGGAGGGGGCGGTGGTGCTGTCCATCCATCCATCGAGGAGGAAACTCCAGGGAAGAAAACGAGCTCAGCTGGGGACACACTGAACGGGCAGGTGACGATCACCCCCACCATGATGTCCAACAGATGTTGGTCTTGTCAGACCTACCCCTCGGGTGTGACCTTCCCCGCCCCCACACCCCTCTCCTCGTCTGGTCTGACCCAGGCCACTGGAGTAGAACCATACTCGGTCCCAGCACCCTTGTCTGCCACTCCACTCACTGTGACCTTGGACCCCGGGGCCCAGGCTCAGATGGGTGTCTTGGCCAAAGAAGCACACATCAGCAGTCAGAATAAATCAAATTCCTCTACTTTTCAAACAGAGTGGGGCGGGGGGGGGGGGGGGGTGCGGTTCATAGTCCACAACACAATCTTTCAAGTCTCCCTTTTCTCTCCCATTCAGTTTCCTCACCCTCTGAAGATACACCCAACCCTTCCTCCTTCTTGAAAAATGCCTCTAGGAAAATTGCCCCCCAGCCCTGGGACATGTGCCTGTTCCCTCTCTTCCTCTTCTCATTCTGCATCATGAGAGCCCAAAAACACCCTGGAAGGAGAAGAACCTTCCTTGGAGAACAGGGGTGGGGAAGGGGGTGGAGACTGTAAGACTCCTATGTTAATGACTACAGCCCTGCCTCTGCAG
Seq C2 exon
AACATATTCCACTGTGCCATGAGCCTGGACCAGCTGTACTTCGCGCGTCCTGTGCCCCTCCACTCTAGCTACTGCAGCCCGCTCCGGGGCCTGTATCTCTGTGGAAGCGGGGCCCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014313:ENSBTAT00000032952:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATTGCATCGAGGCCTACG
R:
CAGGATGGGCCCCGCTTC
Band lengths:
225-1772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]