RnoINT0121130 @ rn6
Intron Retention
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261962328-261964152:-
Coord C1 exon
chr1:261964046-261964152
Coord A exon
chr1:261962449-261964045
Coord C2 exon
chr1:261962328-261962448
Length
1597 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTATAACCTTGCCCCCACAGAAC
3' ss Score
8.67
Exon sequences
Seq C1 exon
TGTTTGACTGCATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGGCAGAGATATCCTCACCCCACAGGACCTAGAGAGGATCTTCGGGCTTCCTGGAGGG
Seq A exon
GTGAGTGCAGGCCTGGGGGCCTCATCCCACTGTCTTCTACCTGCCTCTCTGCCTGGCCCCTTTGGGCCTTACCCAGCCTTCATTAGGAAGTGGTGGAGTCCCAGCTGAGTAGGGCCAGAAGAGAGGACACAGATGCAAGGGTGCCACTCAGGAGGTCACTAGTCCTGAAGCACCGTAGAAAGAGAAAGCCTGCCTCACCTTTCCTACCTGCCTTTTCTAAAGAGAGCCCTCTCTAAGGAAGCAGGACCTTGTAGAGAGCTTCGGATTACCAGATAAAGGAAACTGGAGGCCAGAAGCTAGAAGGCTGCCTAGAAGCCTGCCTGGAGCCCGGGAGCGCAGGAGCGCGGGAGCCTGGGAGCAATGAGTCTAGGAGGCCTGTGAGGACTCAGGGAACCCATGTGGAGTCTGGAGTTCAAGCTGAGGCAGTTCCAACCCTGCAGCTGCCGGCCACAGGAGCTACTGATCCTAAAGAAGCCATAGTGAGCTGAGTGGTCTATGATACACATCAGTGGGGAACCCAGCAGGGATGTAAATGCCGCCATCGTGTTAAACCATGACATTGACTATGTGCCAAAACAATCAGATTTGGAATCTATTAGACTAACTAAAATACACTATTGACATAAATGTCACTAATTTGCCGTTTACTTCTCAAGTGCGGCTCCTAGCAAATCTAAAATTGCATGCATGGCTCTGGTCATTTTTGTTTCAAACAGCACCGATCCAGACAGAAGGCAAAAAGCCAGGCAGTGGGAGGGGCCTCAGAGACTGTATGGATGGTCAGTGTGAGGCAGGGAGGGGCCGGAAGTGTTGGTGACAGAATGACCTGGAGGGTGGACATGACATGAAGGTCGAACCCCAGAGGCTAAGGACAGGATGGCAGCATCGTCAGGAAGGCAGGATGGCTTGGGGAAGAAGTTGTCCACATGGGGACCAGATGAGGGGGCGATCAAAGGAACAGCCTATGGTGACATCTAGCAGATTCTGGTCTCCTTGATCAGGACACCTTGCCTTCCTGGGCCAGTCTGACCTGGGCCAGTGAGCAGAAGCAGTTCCCACTGTACCGTGTCTACTCCTGACAGGGCAATACCCATGGGACAGGTGTGGGGGTGGGGACACTCAAGGCCAGACTGAGATGGTGGCTACCCAAAGCCCCAAGCCACAGCAGGAGCCCCTGCCAGCACAGCAAGACAACCTGTCTTCCTAACAGACTGGGAGTTAGTGGTCCACAACGAACCCCCAGGCCCTCCCTTTTCTTTCCCACTCAATTTTCCTGAACTGTGTAGACATCCCTACTCTTCTTTTCTCTATGGAATACCTCTGGGAGTTTCACCCGGAGTCCGGGACATGTCTCTTTCCCCTCTCACCCTGAGTTAGAACCCAGGGAAACATCCAGGAAGCGGGAGGACCTGGATTAGAATGAGGAGAGGAAGAGCCAGCCATTGCGGCCAAACCCAGTGCACTCCTACACTAACGGCTGGAACCCTATAACCTTTCCCCCACAGCACTCCTGCACTAACGGCTGGAACCTGGGAACCCTGCCTCCCCACAGCACTCCTGCACTAACGGCTGGAACCCTATAACCTTGCCCCCACAG
Seq C2 exon
AACATATTTCATGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGACCAGTGCCCCAACACTCTGACTACAGATGCCCCGTGCAAGGCCTATACCTCTGTGGGAGTGGGGCCCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807:ENSRNOT00000021257:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGACTGCATCGAGGCCTA
R:
CAGGATGGGCCCCACTCC
Band lengths:
227-1824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]