GgaINT0044286 @ galGal3
Intron Retention
Gene
ENSGALG00000007014 | PYROXD2
Description
NA
Coordinates
chr6:23676903-23677217:+
Coord C1 exon
chr6:23676903-23677009
Coord A exon
chr6:23677010-23677096
Coord C2 exon
chr6:23677097-23677217
Length
87 bp
Sequences
Splice sites
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
3' ss Seq
CATGTACATTCTCTTTGCAGAAC
3' ss Score
11
Exon sequences
Seq C1 exon
TGTTCGACTGCATTGAAGCCTATGCCCCAGGCTTCAAGGTGTCTGTCATCGGCAGGGACATCCTGACACCACCTGACCTGGAGAGGATCTTTGGACTGCCCGGTGGG
Seq A exon
GTGGGTGCCAGTGGGCTGGGCTCTGAGCAACGTTCCTGTGCCAGCTGGGGAGGGGACACTGTACACACATGTACATTCTCTTTGCAG
Seq C2 exon
AACATCTTTCATGGAGGGATGTCTCTGGACCAGCTCTACTTCACCCGGCCAGCACCATCCTACTCGACCTACCAGTCTCCAGTCCCAGGCTTATACCTGTGCGGGAGCGGAGCCCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014:ENSGALT00000011349:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGAAGCCTATGCCCCAGG
R:
GGGACTGGAGACTGGTAGGTC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]