BtaINT0121060 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103758691-103759368:-
Coord C1 exon
chr11:103759320-103759368
Coord A exon
chr11:103758797-103759319
Coord C2 exon
chr11:103758691-103758796
Length
523 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GACGGGGGTCCTCCCCACAGGGC
3' ss Score
9.92
Exon sequences
Seq C1 exon
TATTTTAAAGCGTTTACAAAGGACTTCACAACTGGAGAAAACTTTAAAG
Seq A exon
GTAAGGACACACACGTCGTCCTCCACTCTCCTAGACTCCTGCGTCCCTCACAGCGCGCCGAGGGCTGGGCGGGCCTGCCCTCCCCCGCTTCGGCAGGTTCGCCTTGAGGCTGTCGGTCCTTTCTTCCCCGGAAGGGTTAAACAGCCACAGTTTCAGCAAGAATGTTTGCTTTTGGCAAATACAGTGGTTAAATTTTTTTTAAGTAAACGTTTTTGAAAACAAAAGTTTGGAAAAGTGCACGCGTCACAAGGGCACCGCAGTGAATTTTTGTGAGTGACCCCCTGCCCCCTGCCCCGGAGCCCACAGGTGAGGTCGTTCGGCCTGCCTCTGAGCTTGCTGTGGATGGACATGTGCCTGTGGCCTGGCTCCACGCCGGGGGCGCTGGAGCTCAGCAGTTCCCACGCTGGTCCCGTGAGGTGGTCTGTGCATGACTCCACCGTGTGTGCCTCGCGCCCTGGGGGCCCTGGGATGGGGTGGGCGCTCGGCAGGGCCGACTCGCCTGTGACGGGGGTCCTCCCCACAG
Seq C2 exon
GGCCCGACCGAGAACTGCAGACAGTGAGGCGGACCATGATCAACTTCCTGCAGAACCACACAGACGGCAATCGGCCCCCCGCCTGCCCGTCCTTGGACCCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129:ENSBTAT00000042859:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(14.4=100)
A:
NA
C2:
PF0008515=Thioredoxin=PD(10.8=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development