GgaINT0125835 @ galGal4
Intron Retention
Gene
ENSGALG00000001758 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr17:8024775-8025822:+
Coord C1 exon
chr17:8024775-8024823
Coord A exon
chr17:8024824-8025713
Coord C2 exon
chr17:8025714-8025822
Length
890 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TTTTTGTACCTTGGACTCAGCAG
3' ss Score
3.17
Exon sequences
Seq C1 exon
TTCTTCAAAGCGTTTACAAAGCAGTTTACAACTGGAGAAAATTACAAAG
Seq A exon
GTAGGAATATCCTACTGTAAGTGTACGTTACCCTCATTTGAGGGGGGGGAAAAAAGTCCCAAAGGACAAAACCAGCACACATCTCTGAAGCCCGAGATGCAGTTTGCTCAGTGCCTTTTGAACTGTCAGTCAGTTTCCAGGCATCCTGAATTTCATTGGGGGAACCCCCACTCAGATGTTGACTAACTGAAAGCAGACTTATCCCCTGTGTCTGACAGGATCACAGCTTGAGGTGGTTTGTTTGGGGACAAAAGTAATGTTGTCTTTTCTAATGGATTAACATTTAAAAGGGCAAAGGTCAGAAGAAGGACCACCTGCACCATTAACCCCTTGTGTAGAATTAATCTGTAGTTGTACCTGTTACTTCTGGTATTTGTGAGAGCTCATGCATTTTGATTTATTGCTTTTAAAGCTGATAAAATGATCTCACAGGTCAGTTATTCCCTTATGTTATATGGCTTTGTAAGGTCACCTGTCCCATTTGGTATGAATGCCACACGTTTGCAGTTCTTAATCCATCATGAATATCCTCACTGAGAAAAAGCTACTAAAATGTCCCACTGCAACTGCTGTGGAAACAAGCATGCATTTGGAATGAAACAGTTTGAGAGAGAAGCAGCAAAGCAGGCAGATAGATTTGTAAGTCTTGACATTTTATAAATTTTGGGATGGGTTTACAGTTTAAGTTCTCATTTCAACATTAAATTGCAGTCTTACAATTAAATCCTTAGTACCTGTTTGTCAGCCAGAAACCTGTTTGTCTTTTTCACAATCTGAATATGAAATTAAAAAAAATGCTGCAGAGAAGTATGAGAATGTATGAAAACCTACCCTTGAAGTGTTTCTACCAACTGTCTGAAGCACTGCATGTTTTTGTACCTTGGACTCAG
Seq C2 exon
CAGGAGCCGATCGTGAGCTGCAAACAGTTCGCCAGATGATGATTGACTTCTTGCAGAACCATTCCCAAGAGTCAAAACCTCCAGCTTGCCCACCATTGGATCCAGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758:ENSGALT00000034856:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(14.7=100)
A:
NA
C2:
PF0008515=Thioredoxin=PD(10.1=29.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]