DreINT0017534 @ danRer10
Intron Retention
Gene
ENSDARG00000077174 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr5:63610239-63610513:+
Coord C1 exon
chr5:63610239-63610287
Coord A exon
chr5:63610288-63610407
Coord C2 exon
chr5:63610408-63610513
Length
120 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTCATTTTGTGTACTGATAGGAG
3' ss Score
5.85
Exon sequences
Seq C1 exon
TATTTTAAGGCACATGACACCACAAATGACTTTGGAAAGACATATCAAG
Seq A exon
GTGGGTTTCATCATTTCTGATTTCTCTGATTAAAGGTAAAGTTGACTTTGCTATTATTGTTGCACGGATTGCTGTTATGGTGTGTAACTGACTTGGTTTTCTCATTTTGTGTACTGATAG
Seq C2 exon
GAGCTGACAGAGAGCTTCAGACAGTCAGGCAGTTGATGGTGAACTTCATCCAGAACCACACTAGACAAGACTGGCCTGTGGGCTGCCCTCCGCTTCACCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077174:ENSDART00000111282:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(14.2=100)
A:
NA
C2:
PF0008515=Thioredoxin=PD(12.4=38.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTAAGGCACATGACACCACA
R:
CTGGCAGGGTGAAGCGGAG
Band lengths:
154-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]