RnoINT0121286 @ rn6
Intron Retention
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3677930-3679096:-
Coord C1 exon
chr3:3679048-3679096
Coord A exon
chr3:3678036-3679047
Coord C2 exon
chr3:3677930-3678035
Length
1012 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACCCAGGCTTTCTTGTGTAGGAC
3' ss Score
6.97
Exon sequences
Seq C1 exon
TATTTTAGAGCATTTACAAAGGAGTTTACAACTGGAGAAAATTTTAAAG
Seq A exon
GTAAGAACATACAAATTCTATTTTAACCTTTTAGACTGACTCACTCAACCTGGTAAAGTGAATGTGGCCTCAGCAGATGGAGTCCGGGGCCTCCTCCTTTCAGTCAGCAGGTCTGCACTGGTGCTGCCTAACTTCTGTGAAAAAGTTAAATCCTAATAGTTTAGTTTGGGTGAGAATAAGGTTTTTTTTTTTAATTTTAAAAATAATTGTGTGTGTGTGTGTGCATGTGTCCACTCGCCTCTGTGTGTCTGTCCTTAGAGCGCAGGAGTGTCGGTTCCCCTTGAACTGGAGTTATGAGAGGCTGCAGACAGTCTAGAGGTCCTAAAAACTAAATCCAGACCTCGGGAATGTCCTGTCCTTCAGACATGTTCTTACCACGGAGCCAGCTCTCCTCCAAGGAATTCTTCCTTTTGTGCCTAGCTCTCCTCAGAAACTGTGGAAGTCCATTTTCTGTTACAGTCTTATGAAGCTGTCCTTTGGCTACCATGCACGTGTCTCCTTCATTCTGCTCCCTTGACTCTGCCCCTCCCAGCCCCTCTCTTCCCTGCAGGTCATGTCCCCCCTTCCTGTGGTGACAAACCTTGATTGAAAAGTATCTGGTGGGGTGTGCACATGGCAGGTGCGTGCTCACGGGTGTGTGTGAGCCTGGTCAGGTGAGAAGTGCTTCATAGGCTGTCCCTGAGGACACCTGCCATTCCTGGCATCAGGAGTAGTTTGCCTCTGTTAGCAGTGTATGTGGAGTTAGCTGGTGCACCTGGCCACCTCCCGCCACCACATGTGTAAGATTTGGCCACTTTGCCTTGTGTCCTGTAGCCTGTCGTCTGCTCTCAGCTGTGTGGTCTCCTACTGTACACATCTGTGGTGACAGATATGGCCTCTCAGTGAGCAGCAATGCACCTAGGATTGTGTGGACAGCGCTGCTGCCTTCACTGCCCTTGGGCTCTGGGCTTGGGACAGCTGTTTAGGTACAGACACCTGGAGCCACAGCTGTGACCCAGGCTTTCTTGTGTAG
Seq C2 exon
GACCTGACAGGGAGCTACGGACGGTCAGGCAGACAATGATCGACTTCCTGCAGAACCACACTGAGGGCTCCCGGCCTCCTGCATGCCCACCCCTGGATCCTATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574:ENSRNOT00000061735:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(14.5=100)
A:
NA
C2:
PF0008515=Thioredoxin=PD(10.9=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]