BtaINT0121636 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039573 | RABL6
Description
Bos taurus RAB, member RAS oncogene family-like 6 (RABL6), mRNA. [Source:RefSeq mRNA;Acc:NM_001076817]
Coordinates
chr11:106347498-106348157:-
Coord C1 exon
chr11:106347865-106348157
Coord A exon
chr11:106347649-106347864
Coord C2 exon
chr11:106347498-106347648
Length
216 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CTGGCACCCACTGTCCCCAGAGC
3' ss Score
7.26
Exon sequences
Seq C1 exon
CTTCCTGGAGATGATGGAGGCGCGCAGCCGTGGCCACGCATCCCCGCTGACCACCAGTGGGCAGAGCCCGTCCTCCGGCTCCCAGTCCCCCGTGGTGCCTCCCAGCACAGTGTCTACGGGGAGCTCCAGCCCCAGCACGCCCCAGCCGGTTCTGCAGCCACCCCTCCAGGCCCCCCCGGCACCCCCTGCCCCTGCTGAAGCCCCGCCCCTGCCAGCCGCACCTCCCCGACGCAGCATCATCGCTCGGCTGTTTGGGTCCACGCCAGCAACAGAGGCGGCCCCCCCGCCCCCAG
Seq A exon
GTAGGCCCCACCTCCAGGGACGACCCCAACCCCAGGGAGGACCGGAGGCAGGCCCAGCCTTCCCGAAGGGGAGCAGCCCTGTCTGTCTCCCCCGCCCCGGGAGGGACAAGGTCCCCCATCCTCCTGGGCAGGCGGCCCCACAGCCCAGCCGTACCATCCCGTTCATGGGCCAGATGGGGGGGTTGGTGAGCACGAGCTGGCACCCACTGTCCCCAG
Seq C2 exon
AGCCGACCCCAGCTGCAGAGGCCTCCCAGAAAGTCCAGAACGTGGAGGACTTCGTTCCTGAAGACAGCCTGGACGGCAGTTTCCTGGAGGACACAGTCCCTGCCAAGGATGAGAAGAGACTGGGAGCCAGGGGCCCCCAGGACAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039573:ENSBTAT00000001237:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGTCTACGGGGAGCTC
R:
TTCTCATCCTTGGCAGGGACT
Band lengths:
302-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development