GgaINT1001338 @ galGal4
Intron Retention
Description
NA
Coordinates
chr17:592845-594943:-
Coord C1 exon
chr17:594585-594943
Coord A exon
chr17:592869-594584
Coord C2 exon
chr17:592845-592868
Length
1716 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GACAATTCTGCCTTTCACAGATA
3' ss Score
9.28
Exon sequences
Seq C1 exon
GTTCCTTGAAATGATGGAAGCCCGAAGTCGAGGGCACGCATCGCCACTGACAACAAATGGGCAAAGCCCTTCCTCCGGCTCCCAGTCACCCATAGTACCTCCGAGCTCCACATCGACGGGCAGCTCCAGTCCTGGCACCCCACAGCCCCCACAGCCACCTTCCACAAGCTCCACCGTCTCTCCTGAACCCCCCTCATCTTTCTCACCAGTGCCTGCACCTGAGGCCCAGCCACCACACGCGCCTCTGCCAGCTGCTGCTTCCCCAGCCCCTCCAGCAGCAGCCCCACCGCCGAAGCGCAGCATCATTTCACGGCTCTTTGGGACATCTCCTGCGCCAGAGCCCTCTCCTCCCCAGCCAG
Seq A exon
GTGGGTCTAGGCATTTGTTTCTCTGTTATCCTTTCTTTTTTTTTAATCCTTGTGACAGGCTAGGCAGACAGGTAGCCAACAAATATTTGTTCTGTAAAGATGTGTGCTCGCTTTCTTCTTTTGTCCCAGTTGGTGTTTTGGTTTGTCTCTGTGCTGGACTTGGACAGGGACTGTGTCCATCCAGCTGGCTGGGAGCTGTAGTGTGCTTCGTGAGGGAGGCACACAGGGGACACTAAGAAAATAACTGTCATCTGCTTAGCGGGAGCACACATGCCTCTGGAAAAGCAAGAAAAATCATTAGAGAAGCTATTTGAAGCGCTGTCTACACAAAAGTCTCACAGCTCAAAGAGGCTCCTGTTTGTTATCAGAGAATAGTGGAGTGCTACTTTTAAAGGTTATTCAACCATAAATGATCACGTAAGTCCAGGCTCTGTAACGGATTCCCCTCTGGGGAAATATACTCCTTCAGAGATGTTCTGAGGAGGAGAGCAGCATGTCTTCACTTCTTCCATAACACCAGCAAACAATGGAGCAGAGCAGCACGGCGTTCAGTCCGAACCTCAGCTGGATGAAGTTGCAGGGCAGAGGCATTGAGGGGTTTGTTGCATTCATTTTTACTGATCTGGATCTTAATTTGCCTGTCGTATTCACTTTGTTTGTGAAGCCAGCTGGAGCTGCAGAACTGGCACTGCCTAAAAATCATAAGCATGACATGGTTTGAATCACCCTTTGGAAATACCTTCCCTCTTGAACTGTCAGTCCTCAGAGCTCACAGTACTCTTGAAACATCAACACAAAGAAAGGAGGGAGTGCTGGGAAGGGGGTTTGTGGTTTCAGATGTTGAAATCTTTCACTTTTAGGCTTGTACACAATGTTCTGCTTCCTGGATCTGTTACCAGCTGTGACACAGTACTTTCATTTTGGTTTATCTGTGATTCTTCCTACCCAGAAACAAACAATAAAAGTGGAGAAATTATTAGAAATCCTTCATCAACAAAAAACCTTGGTCGTATTGATAAGTATGAAAAAGATAAGCAGTTACCATGAGTGTCACAGCTTTGGGTTTTTCTGGTTTTGGATTTTATTTTTTAATCTGTCACTGAGCTCAAGAACTGTTCAGGTTTGTAGCCTGCAGCCCTGGGATCTCAAGATCACTGTCTTGCAGGGCTGCAAAAGGCAGCAAGAAAAGCTGATCAGACATTGGGGCTTATACAGTGTGCCAAGGCTTTGCATTTCTAGTGAAACATGCCTCAGGACTAGCTAATTGGAAAGCAGCTGAAAATCACTATCACAAACATTTTCTGTGGGAGCCGCTGCGTTACGTTTTTCTTGATGCCTTGCAGCAGTAATTCTTTTAGCTGTGTTTTTTCTTACACTGAAGTTACACTGTAATATTAGCAGTAGTGCTACTCTAGGCAGAAGTAACTGAAAGCTGTGCTAGTAGGGCAAAATCTATATTCATAGCGAAAGCTTGCTCACCCAAAAGAAAATAGCCTAAATGTGAAGTGAAGTCCAGGCAGGAGAAAAAGGCTTAGCATCATAAATTCCGCAAAGGTTAATCTCTTCAGGCTTCTAGTATTCATCCTGATACCTTGATGGGCAAGCATGTCTCTACAAATAACCTATATTAAAGTGAGTCTTTATTTGCAGTAGCTCTTGAGCTTTTGGTTACACAAGGCACCTGAATGCACAGTGTGACAATTCTGCCTTTCACAG
Seq C2 exon
ATACAGTTGAAAAAACAAGAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008984:ENSGALT00000014614:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0465211=DUF605=FE(33.8=100)
A:
NA
C2:
PF0465211=DUF605=FE(2.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]