RnoINT0123496 @ rn6
Intron Retention
Gene
ENSRNOG00000016795 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:RGD Symbol;Acc:1307615]
Coordinates
chr3:2810492-2811191:-
Coord C1 exon
chr3:2810863-2811191
Coord A exon
chr3:2810643-2810862
Coord C2 exon
chr3:2810492-2810642
Length
220 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GAAGCAGCATTTCTCTGTAGAGC
3' ss Score
1.64
Exon sequences
Seq C1 exon
CTTCCTTGAAATGATGGAGGCTCGAAGTCGAGGCCATGCATCTCCTTTGGCAGCCAACGGGCAGAGCCCATCCTCAGGCTCCCAGTCGCCAGTCGTGCCTCCAAGTGCTGTATCCACAGGGAGTTCCAGCCCCAGCACACCCCAGCCTGCCCCTCAGCTGTCTCTAGGTGTCTCCTCCACCTGTCCCTCAGCACCATCTCCTGCACCCTCTTTGGAGGCCACGCCCTCCTCTGTACACCCTCCAGCCCCAGCTCCAGCCCAGCGCCGCAGTATCATCTCTCGGCTGTTTGGGACCTCACCAGCTGCAGAAGCGACCATTTCACCTCCAG
Seq A exon
GTAAGCCTGGGAGCAGCTCTTGTGTGTGAATTGGGGCCACCTTCTGACATTTTGAGCCTCCTATTCCTCACCTGAATGTCCCTGTGCCCCTGAAAAGCCACATGGACCAGCCACTCCTTAGCCTGGTTCTAAAATAGCCAAGTCCCAATCCTTCAGGCACAGTTTTGGGGCTTGCCTAGCATGGAGGACCAAATAAGAAGGAAGCAGCATTTCTCTGTAG
Seq C2 exon
AGCCAGCTCCAGCCCTAGAGGCTCCAGTGAGAGTCCAGAATGTTGAGGATTTTGTCCCTGAAGATGGCCTTGACCGAAGCTTCCTGGAAGACACAACCGTGCCTAAAGACAAGAAAGTTGGAGCCAAAGGGCCACAGCAGGATAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016795:ENSRNOT00000065410:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCAAGTGCTGTATCCAC
R:
TCAAGGCCATCTTCAGGGACA
Band lengths:
306-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]