BtaINT0122601 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63400035-63400393:-
Coord C1 exon
chr17:63400256-63400393
Coord A exon
chr17:63400171-63400255
Coord C2 exon
chr17:63400035-63400170
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCCCCTCCATCTCCCCGCAGAAC
3' ss Score
12.82
Exon sequences
Seq C1 exon
GTGCGCTCGTCCATCCCCGTGTCGCACATCCGAGCCGTGGAGCGCGTGGACGAGGGCGCCTTCCAGCTGCCGCACGTGATGCAGGTGGTGACGCAGGACGGCGCGGGGGCGCCGCACACCACCTACCTCCAGTGCAAG
Seq A exon
GTGAGGCGCCGCCACCATGGGGGAGGAGCAGAGGGCGCCTCTGGGGTCCCAACCCATCTCTGACTGCCCCTCCATCTCCCCGCAG
Seq C2 exon
AACGTGAACGAGCTCAACCAATGGCTGTCGGCCCTGCGCAAGGCCAGCGCCCCCAACCCGGACAAGCTGGCCTCCTGCCACCCCGGTGCCTTCCGCAGCGGGCACTGGACCTGCTGCCTCCAGGCCGAGCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739:ENSBTAT00000022254:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(42.1=100)
A:
NA
C2:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCAGGTGGTGACGCAG
R:
TGGAGGCAGCAGGTCCAG
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development