RnoINT0124486 @ rn6
Intron Retention
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41420394-41420744:-
Coord C1 exon
chr12:41420607-41420744
Coord A exon
chr12:41420530-41420606
Coord C2 exon
chr12:41420394-41420529
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCTGCTTCTATCTCTTGCAGAAC
3' ss Score
12.05
Exon sequences
Seq C1 exon
GTTCACTCATCCATCCCGTTGTCCTGCATCCGGGCTGTGGAGCGTGTGGATGAGGGTGCCTTCCAACTGCCACATGTCATGCAGGTGGTGACACAGGATGGCACCGGGGCATCACACACCACCTACCTCCAGTGCAAG
Seq A exon
GTAAGGTATGGGGCACAGCCAGGGGTGGGGTCTGTGGCTCAGCCTCACCCATCTTCTTCTGCTTCTATCTCTTGCAG
Seq C2 exon
AACGTGAATGACCTCAATCAATGGCTGTCAGCCCTGCGCAAAGCCAGCGCCCCCAACCCGGGCAAGCTGGCTGCTTGTCACCCTGGTGCCTTCCGCAGCGGGCGCTGGACCTGCTGCCTCCAGGCCGAGCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374:ENSRNOT00000001856:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(42.1=100)
A:
NA
C2:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCATCCATCCCGTTGTCC
R:
GCTGACAGCCATTGATTGAGGT
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]