MmuINT0132020 @ mm9
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121125399-121125750:+
Coord C1 exon
chr5:121125399-121125536
Coord A exon
chr5:121125537-121125614
Coord C2 exon
chr5:121125615-121125750
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCGGCCTCCATCTCTTGCAGAAC
3' ss Score
10.49
Exon sequences
Seq C1 exon
GTTCACACATCCATCCCGCTGTCCTGCATCCGGGCTGTGGAGCATGTGGACGAGGGTGCCTTTCAACTGCCACACGTCATGCAGGTGGTGACACAGGATGGCGCCGGGACGTCACACACCACCTACCTCCAGTGTAAG
Seq A exon
GTGAGGCTTGGGGCACAGCCAGAGGCGGGGTCTGTGGCTCAGCCTCACTCATCTTCTTCCGGCCTCCATCTCTTGCAG
Seq C2 exon
AACGTGAATGACCTCAACCAATGGCTGTCAGCCCTGCGCAAAGCCAGTGCCCCCAACCCGGGCAAGCTGGTTGCCTGCCACCCTGGTGCCTTCCGCAGCGGGCGCTGGACCTGCTGCCTCCAGGCTGAGCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-Rasal1:NM_013832:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(42.1=100)
A:
NA
C2:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCACACATCCATCCCGCTG
R:
CTGACAGCCATTGGTTGAGGT
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: