GgaINT1023378 @ galGal4
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11192817-11193774:-
Coord C1 exon
chr15:11193637-11193774
Coord A exon
chr15:11192953-11193636
Coord C2 exon
chr15:11192817-11192952
Length
684 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CCACCGCTGCGTCCCCGCAGAGC
3' ss Score
11.3
Exon sequences
Seq C1 exon
GAGCGCAGCTGCATCCCAGTGGGGCACATACGGGCGGTGGAGCGCGTGGATGAGGGCACGTTCCCACAGCCCCACGTCATGCAGGTGGTGGCACAGGATGGCACCGGGCAGCTGCGCACCACCTACATCCAGTGTAAG
Seq A exon
GTGGGGACATCCCCATCCCAGCACCACCGGGACCCCAACACTCTGGGCTGCCCCTGCCCGGGTTGCACCCAGCAGCCAGCGTGTGGGGGCAATGGGGGCAGCCCCGGTCCCAAGTCCTGCTGTACTGGGAACACTGGGGTATCAGACTTTAGTAGTACCGGGGTCACTGGGGTACCAGCCCTACCCGTGCTGGGATCAGTAGGGTATGCAGCTATATCTGTAGTGGGGTTCACTGGGCTATCAGTTATACTGGGGTCACTGGGGTATCCAGTAATATCTGTACTGGGATCACTGCGGTACCAGCCCTATATACGCTAGGATCAATGGGTAGCACCCCTATCTTTGCTGGGTTAATGAGGTACCGATACCCTGCCTGTCCTGGGATTTACACCGGAGTCATTAGGGTACCAGCTCTGTCTGTACTGGGATCAATACTGGGTCACTGGAGTACCAGCCTTGTCCATACTGGGGTCACTGGAATAATAGCCCTGTTCCCAAGCGCCACCACCCCACCAACTCCCACCTGCGCCATCAAACTGTCCCTCGGGGTCCCCATCTCCCACTGCCCCATACCACCCCCTATGCCCACCCTGGGGATGCTGCATGGGGAACCAAGGCCCGTGGCACTGCCCAACACGACGGGTGCCAGCCCCACGGGTGGGTGCCACCGCTGCGTCCCCGCAG
Seq C2 exon
AGCGCATCAGAGCTGTGGCAGTGGCTGTGGGCCCTGCGCCAGGCCAGCAGTGCCAACGGGGCCATGCTGCCCACCTGCCACCCCGGCGCCTTCCGCACCGCCCGCTGGACCTGCTGCCTGCAGCCCAACCGTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(42.1=100)
A:
NA
C2:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000013239fB11311
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCATCCCAGTGG
R:
GTTGGCACTGCTGGCCTG
Band lengths:
191-875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]