BtaINT0122607 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63415537-63421324:-
Coord C1 exon
chr17:63421263-63421324
Coord A exon
chr17:63415667-63421262
Coord C2 exon
chr17:63415537-63415666
Length
5596 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTGGTGCCTGTGCCCTCCAGGAA
3' ss Score
8.72
Exon sequences
Seq C1 exon
GCAAGATGACATCATAGGCAAGATCTCGCTGAGCAGGGAGGCCATTACAGCGGACCCCCGAG
Seq A exon
GTGGGTGAGGGTGCCAGGCAGAGGGAGGGGGGGGTGGCGCTTGCCAGGGCATAGCAAGCAGCATGGGCAACACAGAGCCTTCGGGGGAAATTATTTTGGTTGTTGCTTCTGTTTTGAATTTTATTATTTTTTAATTTGTATTATTTATTTTTTTGCATGTGCTGGCTCTTCGTTGCCGCATGGGCTTTTCTCTCGTTGCAGCGAGCGGGGGCTACTCTCTAGTTGCCGTGCACAGGCTTCTCATTGCAGTGGCTTCTCTTGTGGTGGGGCAGGGGCTTCAGGAGTTGTGGCTCCTGGGCTCTGGGGCGCAGGGTTAGTAGTTGTGGCTCATGGACTTAGTTGCTCCATGGCACATGGGATCCTCCCGGATCAGGGATCAAACCCGTATTTACTGCATTGGCAGGCGGATTTTTTTTTTTACCACTGAGCCACCAGGGAAGCCTGGATTTTAATTTAATTCATTTATTGAGCAGTTAACTTATTTCCGTTCAATATTCAAAAGATACAGTTAGCGGTGGGACTGTCGCTCCTGTCCCAGCTTCTCCATTCTCATCCCCCATGTTGTCAGTTTCTTGTATGTCCTTCTAGGGACATTTTAAACCTACGCAAGCAAGGGACTTCCCTGGTGGTCCAGTGGCTAAGACTTCACACTCCCGCGCAGGGGCCCCGGGTTTGATCCCTGCTCAGGGAGCTAGATTCCACGTGCCACAACTAAGACTTTTCGTGCTGTAACTAAAGGTCCCGCATGCCGCAACTAAGATCCAGCACAGACAGATAAATAAAATAAATATTTTTTAAAAACATATGCAAGCAAGTAGCAACAGTAATAGCAGCAAACATTTATGTAGTACTTACTGTGTGCTGGTCACGTTCTAAGTGCTTTCAGTCGGTTCAGTTCAGTTGCTCAGTCATGTCCGACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCATCTCCCGGAGTTCACCCAGACTCAGGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTATTGGAGTTTCAGCTTTAGCATCAGTCCTTCCAAAGAACACCCAGGACTGATCTCCTTTAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGCACTCAGCCTTCTTCACAGTCCAACTCTCGCATCCATACATAACCACTGGAAAAACCATAGCCTTGACTAAATGGATCTTTGTTGGCAAAGTAATGTCTCTGCTTTTCAATATGCTATCTAGGTTGGTCATAACTTTTCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTAGTTTTGGAGCCCAAAAAGATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTGTTTCCCATGAAGTGCTTTACACATATCAATTCACTTAATTATTCTAATAACCGTAAGAGATGAGCACTCTTGTTATGCCCATTCTTTGTGCGCATGCTCAGTTGCTTCAGTCATCTCCAATTGTTTGCGACCCCATGGACTGTAGCCCGTCAGGCTCCTCTGTCTGTGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCCATGCCCTCCTCCGGGGGATCTTCCCGACTCAGGGATCGAACCCACATCTCTTATGTCTCCTGCATAAGCAGGCAGGTTCTTTACCACCAGTGCTACCTGGGAAGCCCTATGCCCACTCTTTAGGTGAACAAACTGAGGCACGGGGGTTAAATAACTTGTCCAAGATCACAAAATGACTAAGTGGGACAGCTGGGATTTGAACCAAGTTGTCTAGTTCCAAAGTCTGTGCTCTTTCTACTATATGTGTTTTGTTCTCTGCTTATAGAAACAGGGCTTCCCTGGTGGCTCAGACGGTAAAGCGTCTGCCTACAATGCTGGAGACCCGGGTTCAATCCCTGGGATGGGAAGATCTCCTGGAGAAGGAAATGGCAATCCACTCCAGTATTCTTGCCTGGAAAATCCCGTGGACGGAAAGGCCTGGTAGGCTATAGTCTGTGGATTTGCAAAGAGTCGAACACGACTGAGCTACTTCACTTTTTTAGTTTTTATAGTAATAGGACTCCATTAAACGCACTGTTCTATATCCTGTCTTTTGACTTCGCCGTTTATCTTGGAGATCTTTCCATACTAATGTCTCAAGAGCTTCTGCATTCTTTGCTTTTAGTATGACTTCATGGCACTCCGTTTTGTGGATGTACCATCATTTATTTGGCCAAGTGCCTTCTTGATATGCACTTGGGTTACTGACAATGTTTTCCTGGTTCGAACAATGCTGCAATGAATAGCCTTGTACAAATGCAATTGCACACATCACACAAGTTTATATTAATGCAAGTTTATATTAATTGAAAAACAATTTTGGCTGTGCAGCGCTCTATGTTGGATCTTAGCTCCCCAACCAAGGATCAAACCCATGCTCCCTGCATTGGAAGCAAGGAGTCTTAACCACTGGATTGCCAAGGAAGTCCCCATGTATGCCAGTTATATCAATCAGCATAATGAATTCCTAGAGGTGGATTTGCTGGATCAAAGAGTATCCACATTAGCATGTTTTATTATAGTTATTGATTATAGTTATTGTTAAGTTACTCTCCAGTTACTTAACAGTTAACAGATTAATCTACCCTATAACCTTGTCAACAAATGCCAAACTTTTGGATCTTGAATCTGATAGGTTAAAAAATGGGCTCGTTGTGTGCGCTGTTTTGCATTTCGGTATAAGTAAGTTTGAAGACCTTTTTATATACTCAAGAGTCTCTTTATTTCCTCTTTTTTGTGTCTATTGTCTATTCACATTGTATGTGTGTTTTTCACCCCCTGGGTTGTTTGCCTTTTCTTCCTTTTTTTGTGGGAGATCTGTATATATGAGGAAAATAAACTTTGTCACATTAGCTGCATTTTTTTTTTCTCCTTGTGGCTTATATTTTGACTTTGCTTATCATTTTTTCCAGTAGAAAATTTGCTTCTTGTTCTGTAATCAAAATTTGTGTGTGTGGGGGTGCACTTTTATGTAATGCCTAGAAAGTCCTTCTTAGTCCTGATATTAGGACAGATTGTTTTATATGATTCTTTCTAGCAACAGTTTGTTCCCATTTTATTTTAACAGTCAAGTCTTTGATCTATTTGGAACTTACCCAGATACAAGGCATCCAATAGGGATTGAACTTTACTGCTTTGGTCTAGATGATTCTTAGTTATCTTGACACCATTTATTAATAATATAATAATATATTTTTGCATCAGTGAGCATTAGTTGACAGCACACTATGTGCCAATCATTATAATCATCACTTCTGTTTAGTGAAGGCTTATTATGTGCCAGGCACAATGCTAAGCACTTTACATTTAGTCCACACAATACCAAGTGAAGTGAGGTGGGATGGAACTTCACTTTTCTAACTTGGTTATTGCAACAGATACCTAATCAAGTTAGAAAAAGCTGATGGCATCCTGGACTTGGGAATAACAAAAGAGATAGAGAGGTAAAGTAGAACTTATACTTCCGGCAGCATGGGAGACTAGATCCACAGAATGGCTCTCTGGCCGCATAACAGTGAGATCCTGAATTAGATGCAATTCCTAACACATTGTTGGAAGGATGTGAAGAGGATTCAGTATTCCTCCATTTGCATGCAAGCATGTGTATTAAGTCTCTTCAGTCGTGTCTGACTCTTTGCGACCCCATGGACTGTAGCCCGCCAGGCTTCTCTGTCATGGAGGAGCCATCCCACATCATGGGATTCTCCAGGAAAGAATATTGGAGCAGGTTGCCATGCCCTCTTCTATTCCTCCTTCTACTCCCGGTGAATCATGAGCTAAAACCTAACATGGAGTGGTGAGCAAGAGGCAAGGCAGTAAGGAAGGATTTCCCTGAAAGTTAACGTCAATATCAGATTCACAGTCAACAGGCTAAATCTTAGGCCAGGGGCAAGGTGGCTATTACTGAACCTGAGAATTCCCCTTCAGAGTTCCTAAGCAACTGCTACTCCTCTCCAGGGATAAGCATCCTCATGTTAAATTTCCCACAGAGTGAGCTCAAACAAGTGTGACTTCACAATCGAAGATCATCACACACACACAAGGAAGTGAGCCACAAAGAGCAAGAGTCAGCAGAAATAATGACCATCAGATTTAGACCCATAAAGACTTTAGACTTTGTATTTATGATATATAAGAATTTAAAAATTCAATAAATAAAATTTAATCACCTGGAAGGGCCAGCAATAACCATGATAAATTAAAGCAATGCATTAAAAAAAAAATAGACTGACTTGGAAGAGAACCAGATCAAATGCTTAGAGATAAAAGGTACAATTGTTGACCTTAAAAACCAAGTGGATGAGTGGCACATCATTCTTTCAGAGCTGAAGTCAGAGTTAGTGAACTGGGAGAGAGATCTAAATAAGTTATTTAAACTTCAGCTCAGAGAAATGAGAAGCATATAAGAGAAGTTCAAGACATGGAAAATAACTGAGAAAGTCTCTAACATCCATTTAATTGGAGTCCTAGAAGCAGAATATAGAAAAATCTGGGGAGAGGAAATGATTCTAAAAAATTGATGACCTGGAATTTTCCAGAACGCAAGAGCATGATTTCATAAGTAGAAGGAGCACAGCCTTTACTAAGCAGGGTTTTTTTTTTTTTTTTTTTTTAATATCCTTACCTAGATATACTGTGGGGAGACTGCAAAAAACATCAAAGACTTAGTCCTTAAACTTGGAAAAGATAGACCATTCATGCAAGATCAATTATTAGGCTGAAATGACTTCCCAGTAACTACAACTGAAGCTGGAAGTCAGTGGAACAGTATCTTTAAAATTTTTTTATTAATTTAATTTAATTTTAATTTAAAAAATTTTTTGGCTATATTCACTTGCCGTGTGGGATCTTAGTTCCCTGACCAGGGATGGAACCCATGCCCCACACCTGCATTGGGAGTGCAGAATCTTGACCACTGGACTTCCAGGGAAGTCCCTGGAACAGTATCTTTAATGTGTTGAGAGAAATGAGAGACAGAGAGAGAGCGAGAGAAAGAAGGAGAGGTTAAGATTGAGAAGACCAAGACTGACTTGACTGATTCAGGCCGAGAGCCTATAAGAAGGCTCAGAGATAGGAATGCCAAGTGTTGTTTTTTTTTTTTTCCTGAGGGGAGAGTAAATGATGGACAGATGAAGAGTGTGATAGTACATGGTTAGGGGCACTGGCCCTAGAACTATACTGCCTGCATTTGAATCCTAGTTCTACAGTTTACTAGCTCCCTCCTTGCTGTGCCTCTTTTTCCTCATCTGCAAGTGGGGATAATTACAGTAACTATAGCAGAAGGCTACCGAGAGGTCCATGACTCGATATCTTTTTAACGTTAATTGAATTTTAAAAGATAATGCAATGCCTAGACGGTGATAGGTGCTTAATGAATGCTGGTGCCTGTGCCCTCCAG
Seq C2 exon
GAATCGACAGCTGGATCAACCTGAGCCGCGTGGACCCGGACTCGGAGGTGCAGGGTGAGATCTGCCTGTCCGTGCAGACGCTGGAGGACGTGCGGGGCCGTTGTCTTCACTGTCACGTGCTCCAGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739:ENSBTAT00000022254:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(11.0=40.9)
A:
NA
C2:
PF0016825=C2=PU(9.8=18.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development