MmuINT0132027 @ mm10
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120655068-120659632:+
Coord C1 exon
chr5:120655068-120655129
Coord A exon
chr5:120655130-120659502
Coord C2 exon
chr5:120659503-120659632
Length
4373 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGTGTGTGTGTGTCCTCCAGGGA
3' ss Score
11.35
Exon sequences
Seq C1 exon
ACACGATGACATCATTGGGAAGATCTCATTGAGCAAAGAGGCGATCACAGCCGACCCTCGAG
Seq A exon
GTGAGCAGGGCGTGGCCTGCAGAAGAGGGAGAATGGGCTGATTCACAGGGGCCTTGCAAGGACAGAGGGAGTAGGGGCAGGGATGGTGGGGGACCTTATGCCTTTGATATGTGATTCGGTTCATCTATTGAGCAGCTAACTCATCTTCATAGACCTGGGGTTCACACAGCAGAAACATGACACCCCTTCCTATCTGGGACTCTGCTCCCCATCCCGTGTAGTCAGCAACTTCGGTTTGGCCTTTTTTTTTTTTTTTTAAACAGAATCTTTCTATCTTTCTATCCAACCCTGGATAGCCTTCAAGTTCTGATCCCCTGCCTCAGTTTCCCTCCTGCTGGTATTCCAGTGTAGAGCATCATTCCTGGCTGAGGCTAGCCTCCTCATGTTTTTTCCTAGACACTATCTTTGCATGTTGGGTGTGAACCCTGAGCCTAGCAAGCACTTTGCCTCTAAGCCATACCCCAGCCCTGGAATGCTATTTTTTAAAACCAATAGCAGCACCCCACCCTGACTCACTGTCAATGCATGCTGACCCCTCCTCTGAGGTAGTGACCTTTATGATGATGGCCTAAAGGATCCAGTGACTTGCTCACAGTCACAAAGGTTTCGTGACAACCAGGATTACTTGGGACTAAAGTTGTTTGTGTCCAGGATTTGAGCTTACCATGTTATACTTGGTGTGTGTGTGTGTGTGTGTGTGTGCACGCGCGAGCATGTGCGCATGTGCATGTGCCCGTGTGAGTGCATGTGAGTATAGGTTTGTCTCAGCCCACATGGTATCTTGTTATACTCCATGTGTCTCTGTGTGTGTCTGTGTGTATATGAGTGTGTATGTACATGAGTGTGTATGAGGTATCCTGTTACACTTTGCATATGTGTGTGTGTGTGTCTGTGTGAGCGCATGTGAGCATGGATTTTCTCAGCCCATGAGGTGTCCCACTACACTCTGCATATGTGTATATGAGTGTGTGCATGTGTGTGTGAGTGTGTATGTGTGTGCATGGGTGGGTGTGCCTGGGTGAGTGTGTGTGTGTGTGAGAATAGGTTTTCTCAGCCCACGTGGTACACTGTTACACTTGGTTTTCCCTAGTTGCCTTTCTTACCTCATGGTGTATTTTTAAATTTTTGTTTATTTTTATTTTATGTGTGAGTGTTTTGCGGGCTTGTCTGTGAGCACCATGCATGCAGTGCCTGTAGAGGCCAGAAGAGAGCGTTGGATCCCCTGGAACTGGAGTTACAGATGGCTGTGAATATGGGTGTTGGGAACAGAACGCAGAGCTTCTGGAAGAGCAGCTGGTGGGAGCTGTCTCTCCAGTCCCATTACCATGGACTTTTGAGACAGGGTACCCCAGGCTGCGGGGAATGCATGCGGTCCCGGTCTCAGCCACCTCATCCATGTTGAGATGACAGGCATTCGCCTCTGTGCCTAGCAGCTACAGTGTACTTGTTAGGTCTTTATGTAATCATGCTTGAAGGATTTCTGAGTTCTGAAATCGCTGAATTCCACTGCAATGTCCCGTCATGGCTGGCTCGCCCATGAAGCATCTGGGGTGTTGGCAATGCATTCCCAGCTTAAGCAATTGCAGCGAGCAGCCGGTACTTCCTAACAATGTCACACATTCAGGTCCCTGTCAGTCAGAGAAATTCCTGAAAGTTATTGAAGTTTATTCTTTGCATCAAACATACATTCTTATATGTATTCTTTTTCTGTTGCTTTTTGCTTTGATTTTTTTTTTTTTTGGATACAAATTTCCTCTGTGTAGAGCTGGCTGTCCTGCTCCCTCTGTAGACCAGGCTGGTCTCCAACTCAGAGATCTGCCTGCCTCTGCCTACTGACTGTTGAGACTAAAAGGCGTGTGCCACCAGTGCCCGGCGTTGTATGTGTTCTTTTTTTAATACATCTCAGACCCCATGAGTTTTGAAGAGCCAAAGAAAATAAGGATGCCTCAGGAAAGGGCACCTGTGGGTGCTGGTGCAGGGCGACATTGTCCTCATTTTGATGGGGCAGAGGGATACTACATACACACTTTACTGCTGGGGCCACCAGCAAGGAGGGCATATGCTGGTAAGAGTGGCTTCCAAAGCTGGGCTTGGGGCGCATGCCTGTCATCATAGCATTTGGGAAGGTGATACCTCAGTTATTCATCACCATCATCACCACCATCATTTTTAGTGCTGGAAACAAACCAATGGTTCTATCCCTGAGCTGCCCCATCTGCATATTTGCTGGTTATTATATTAAAGCCACGGGGGCTGGAGAGGTGGCTCAGCAGTTAAGAGTGAATGCCGCAGCCAGGCCTTCACTTCACAGACCAGGCTGGCTTTGAAGTCTTAAGCCTGCCTCTGCCTCCCGAGTCCCGGGATTAAAGGTGTGGGTCACCATGCCTGATTTTTTTCTTTCTTTCTTTTTCTTTTTTTGATCAAGACAGGGAAGAGATTGGAGGTCTAGTGCCAGAAGCTGGGGTGGTAACTTTGCAGGGATCCAGTCGCTTCAGGACAAAGCTAGACACAAAGGATCAGTGATGTGTCTGTGACAGAAAATGGTAGATTCCTGGACTTGGGGGTGGTGGGGAGAGGAGGAGGCTCTTCTTTGTCTAGCAACATGGAAGGGGGGCTCACGATCCTCAGAAATGCCCCCCTTCCCCGAGACAGGATGATCCCGAGAAAGAAAATCCCTGATTTTGACCTCATCTTTACCCCAGTCAGGTGCTAAACAGAAAGGGCTGAACAGCAAACCGGCCAGGGAGCATGGCTTTCCCTGATGAAAGCATCCAAGAAGGGAGCCAGGGTCGAGGGAGAAGATACTGACCCAGGAACCCACCCATTCCCCCATCCCTGGGGGATGCACTCCTTGAGGTTTACAGAGAGAACAAATTCACAGAGAACACCCAATACAAGGGAGCAGTCACAGTGAGAGTCTGCAGCAGCTGTAAAGGGATCTGGACCCAGCAAGACCTTAGAGCTACGCTTCCCAATCTTCCTAACACTGCGACCTTTTCATACAGTTCCTCATGTGGCCGTGATCTGTAACCATATCATTATTTTCATTGCTACTTAGTAACTGTAACAGTCAGAAAGCAGAGAGGATTGGATTGACAGCTGGGGCTCAGCTCCATTGCTTCGTCTTGGAGGATCCAGGATTCCAGCCTAGAGAATGGCCCATATTGTCATGGGTCTCCCCACCACAGTTACATAATCGAGAGAATCCCCCACGGCCGTCCTCAGGGGCTAACCGTGATCTAGCTAATCCCTCCCAGGTGGGCCTGGAGGTCTCTCTTCCAAGTAATGCTAGAGCCCATCCATGGATCACGCTAGCCACAGCTACAGGTGCTTTAAGAAGCTAGCTGTTTAAAGAGCTGAAAGGGCAGCAGAGATTAAAGCATCACACCAGGTGTGTTGGCCACGGCTGTGACCCCTGCACTCTGAAGTAGGAGGTGCAGGAGTTCTGGACTGGCCTGAGCTGTATGGAAATAAAACAAAAAAGAAACAAATGGGAAAGGAAAGATGTTTGCCAAAGAGGGATTGGGTTGGAAGCTGACTTCCCCTAGCTATAGTGGGAGTCATTAGTCAATAATTGTTTCAAAGTATGATGAGAGGTGTGTGTGTGTGTGTGTATGTATGTGTCTGCATGTCTCTGTATGAGTGTGTGAATGTGTGTCTCTGTATGTGTATGTGTGTGTCTCTGTAAGAGTGTGCATAAGTGTGTATGTCTATGTGTGTCTCTGAGTGTGCATAAATGTGTGTGTCTGTATGTGAGTGTGTATATGCACGTCTTTGTGTATGAGCGTGTCTGTATGAGTGTCTGTGTGTGTGAGTGTGTCTGTGTCTGCATGAGTGTCTCTGTGTGTGTCTGTGTGTGTATGTATGTGTGCGCAAGTATGCATGAGTGTGAATGTGTTGTGTGTGTCTCTGTATGAGTATGTGTGTGATTGTGTATGTTTGTGTGTGTGTCTATATGTGAGTATATGTCTCTGTGTGTGTCTCTGTGAGTGTCTGTGTGTGAGTGTGTGTGTCTGTGCTGTGTGTGTTTCTGTTTGTGTGTGTGTGTGTCCTTCATGTTCCAGGATGACCTGAAGCTCAGAATCAGCCCCAAAGCAACACTACCCATATTCAGACTGATCTCTGTTGTTTTCTAGCTATGGAGTCAAGGGCAGAGGCCTATTCTCCATGCCTCAGTTTCCTCCTCTGACATGGGGCTGATTGCAGCCCGCATCTGAGGTCTTGCATGAGAAGCCAATGCCCACGTCACACACAGTCGTAATCAGTGACAGTTCTGAGCTGACACAGCACCTCATGAGCATCAGGTGCTTCCTAAACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTCCAG
Seq C2 exon
GGATCGACAGCTGGATCAACCTGAGCCGAGTGGATCCAGACGCTGAAGTACAGGGTGAGGTCTGCCTGGATGTGAAGCTATTGGAGGATGCTCGGGGCCGCTGCCTCCGCTGCCACGTGAGACAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602:ENSMUST00000031606:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(11.0=40.9)
A:
NA
C2:
PF0016825=C2=PU(9.8=18.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types