GgaINT0006279 @ galGal3
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
NA
Coordinates
chr15:11516315-11516586:-
Coord C1 exon
chr15:11516525-11516586
Coord A exon
chr15:11516445-11516524
Coord C2 exon
chr15:11516315-11516444
Length
80 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCCCGTGCCCCCCTTCTTAGGCA
3' ss Score
9.39
Exon sequences
Seq C1 exon
GCACGATGACGTGATCGGCAAAGTGTCGCTGAGCCACCAGCAGATCTCTGCACAGCCGCGAG
Seq A exon
GTGAGCAGGGGCGTGGGGAGTATGGGGGGCATAGGGTCACCCCTGTGCTGGGAGTGCCCACCCCGTGCCCCCCTTCTTAG
Seq C2 exon
GCATTGACAGCTGGCTCAGCCTGGCGCCTGTGCATCCTGACCAGGAGGTGCAGGGTGAGATCCACCTGGAGGTGAGGATGCCTGAGCAGGGCCACCCACGGGTGCTGCGCTGCCACCTCATTGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(13.6=40.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGGCAAAGTGTCGCTGAG
R:
GGCTGCAATGAGGTGGCAG
Band lengths:
178-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]