BtaINT0122635 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8720538-8721369:+
Coord C1 exon
chr7:8720538-8720928
Coord A exon
chr7:8720929-8721211
Coord C2 exon
chr7:8721212-8721369
Length
283 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CAGTTGCTCCCTCCCCACAGCTG
3' ss Score
9.79
Exon sequences
Seq C1 exon
CATCTCTGCAGGGGAGAAGCCTGGCTTTCTGGCCCCCCGCGACCTCCCCAAGCACACCCCTCTCATCTCCAAGAGTCAGTCCCTGCGCAGCGTTCACGGCGCAGGTAGTTGGGCCCGGCCGCGGCTGGAGGAGGAACAGCCCCCTCGGCTGCCTCGGCCGGTAAAGCGCACTCAGAGTGTCCCGGCTGGCCGCCCCGCTCGCCGCCGCCCGTCTGCCGGACCGCGGCCGCGACCCAAAGGCTCCCTACACGCGGGACCCGCGCCCCGCGGCCGGCCCTGGACTGGAGCCTCAGCATCGCTGCCTCGGAAGCCGTCGGTGCCCTGGCAGCGCCAGATGGACCAGCCAAGAGACAAAGACCAGGCGCTGGGCACCCACCGACCCGTGGGCAAG
Seq A exon
GTGAGGTGTACAGCTCAGGTCTGCGCATAGAGTGGGGAAACAGGATTGGAAAAAGACTGAAAGATAGGCAGGTCTCGGTTCAAACACCGAGCTTGCTGTGGTCTGTGATTCAGACCTAACCCAACCCTCTCTGAGCCTCAGTTTTCCTCTTCTGTACAATTAGAGCGTCATTACCCCATAGGGCGGTTAGGAGGAAGAGCAAACGGAACAGGGAGGTCAGTCAGTGTCCGTGGGGAGAAGGGGCAGGACAGTGGCTCAGGTTACAGTTGCTCCCTCCCCACAG
Seq C2 exon
CTGGCGGAGCTTCAGTGCGAGGTGGCTGCCCTGCGTCAGGATCTGAAGATGCTGTCCGGCCTCGTGGAGTCACTCAGCACCCACATCCGGTCCTTGAGCGAGCAGCAGGAGCAGCTTCGGACCCAGCTTCAGCTCCTGGATTCCAGGCTCCGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.585
Domain overlap (PFAM):
C1:
PF045137=Baculo_PEP_C=PU(2.0=1.5),PF138631=DUF4200=PU(0.1=0.0)
A:
NA
C2:
PF045137=Baculo_PEP_C=FE(51.5=100),PF138631=DUF4200=FE(51.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTAAAGCGCACTCAGAG
R:
GCCGGACAGCATCTTCAGATC
Band lengths:
294-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]