HsaINT0137722 @ hg19

Intron Retention

Gene

ENSG00000105122 | RASAL3

Description

RAS protein activator like 3 [Source:HGNC Symbol;Acc:26129]

Coordinates

chr19:15563469-15564308:-

Coord C1 exon

chr19:15563918-15564308

Coord A exon

chr19:15563627-15563917

Coord C2 exon

chr19:15563469-15563626

Length

291 bp

Sequences

Splice sites

5' ss Seq

AAGGTAAGG

5' ss Score

10.51

3' ss Seq

CAGCTGCTCTCCCACCACAGTTG

3' ss Score

6.7

Exon sequences

Seq C1 exon

CCTCTCCGCAGGGGAGAAGCCCGGCTTCCTGGCCCCCCGGGACCTCCCCAAGCACACCCCTCTCATCTCCAAGAGCCAGTCTCTGCGCAGCGTTCGCCGCTCAGAGAGTTGGGCCCGGCCACGGCCGGACGAAGAGCGGCCCCTGCGGCGGCCCCGGCCGGTGCAGCGCACGCAGAGTGTCCCGGTCCGGCGTCCTGCCCGCCGCCGCCAATCTGCGGGGCCCTGGCCGCGACCCAAAGGCTCCCTGAGCATGGGACCAGCGCCCCGCGCCCGGCCTTGGACCCGGGACTCCGCCTCGCTGCCTCGGAAGCCGTCGGTACCCTGGCAGCGCCAAATGGACCAGCCGCAAGACCGAAACCAGGCACTGGGCACGCACCGACCTGTGAACAAG

Seq A exon

GTAAGGTCAGGCCCAGGTCCGCGCCTGGGGAGTGGGAACAGGGACGCGACTGGGGAAGACTGAAGGGCCAGGCAAGTCTGGGTTCAAGTACCCAGCTCGCTGTGCTGTGTGACCCCAGGCCTAGCCCGACCCTCTCTGAGCTTCAGTCTCCCCAGCTGTACCGCAGGAGGGATGTTCCCCAACTAGGCAGGCCGGTGATGACGCTGAGCGCTTGGGCCTGGGAGGTCAGGGTCTCCGGGGAGACACAGGGGCGGGACAACGGGTCAGATTACAGCTGCTCTCCCACCACAG

Seq C2 exon

TTGGCAGAGCTGCAGTGCGAGGTGGCCGCTCTGCGTGAGGAGCAGAAAGTGCTGTCCCGCCTCGTGGAGTCGCTGAGCACCCAAATCCGGGCCTTGACGGAGCAGCAGGAGCAGCTGCGGGGCCAGCTGCAGGATCTGGACTCCAGGCTCCGTGCTGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000105122-RASAL3:NM_022904:15

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=1.000 A=NA C2=0.623

Domain overlap (PFAM):

C1:

PF045827=Reo_sigmaC=PU(11.3=9.9),PF101864=Atg14=PU(17.5=16.0),PF123293=TMF_DNA_bd=PU(2.9=1.5),PF104824=CtIP_N=PU(5.8=4.6),PF154501=DUF4631=PU(11.5=9.9),PF082327=Striatin=PU(1.9=1.5),PF041569=IncA=PU(22.9=22.9)

A:

NA

C2:

PF045827=Reo_sigmaC=FE(45.2=100),PF101864=Atg14=FE(43.3=100),PF123293=TMF_DNA_bd=FE(74.3=100),PF104824=CtIP_N=FE(50.0=100),PF154501=DUF4631=FE(46.0=100),PF082327=Striatin=FE(50.5=100),PF041569=IncA=FE(39.7=100),PF079267=TPR_MLP1_2=PU(47.2=94.3),PF045137=Baculo_PEP_C=PU(50.5=88.7)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000341905