BtaINT0122636 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8721212-8721928:+
Coord C1 exon
chr7:8721212-8721369
Coord A exon
chr7:8721370-8721864
Coord C2 exon
chr7:8721865-8721928
Length
495 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TTCACCCGTAATTCCTACAGGAC
3' ss Score
8.82
Exon sequences
Seq C1 exon
CTGGCGGAGCTTCAGTGCGAGGTGGCTGCCCTGCGTCAGGATCTGAAGATGCTGTCCGGCCTCGTGGAGTCACTCAGCACCCACATCCGGTCCTTGAGCGAGCAGCAGGAGCAGCTTCGGACCCAGCTTCAGCTCCTGGATTCCAGGCTCCGAGAAGG
Seq A exon
GTAAGCCCCGCCCTCTCTACTAGCTCCGCCCCAGGCGGCCTTGCTAAAGAGAAATCGGCTCAGGCCCCGCCTCCCAGTAAATCCACCCAAATCACGCCTGGCACGGCCACGCCCCCTCTGTAAGACCCGCCCCTACACATCTAAGACCCGCTTCTTGGTCACCTCCATCCACCCCAAGTCTCTGGGAGGCCCTCTCGAGCAGTCCCTCAGTCAGCTCCTTCCAAACAAGTTGGGACAGACCCGCTATCTCTTAGTCTGGGCCCGCCCCTATCCTGCTCACGACCTCACGCAGGACTGGTTGATTGGTCCTTTCATCGCAGCCAGTCCAGGTTCTAATTCCGCAGTCCCTTCTTGAAATGTATCTAGGCCCCACCCCCAGGCTGGATAAACCCCACCTCCATCTCAAGCTCCGCGCCAGAGTCCCTGACTCCAACCAGGAGCTCTAGGGGAGTCTCTCAGCCTCTGACTCTTTCCTTTCACCCGTAATTCCTACAG
Seq C2 exon
GACCGCGAAGTTGGATCCAGGGCGCGATCGTTCAACCAATGAGGGCCACAGGCTGAAAAGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF045137=Baculo_PEP_C=FE(51.5=100),PF138631=DUF4200=FE(51.5=100)
A:
NA
C2:
PF045137=Baculo_PEP_C=FE(20.8=100),PF138631=DUF4200=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCTTCAGTGCGAGGT
R:
CCTGTGGCCCTCATTGGTTG
Band lengths:
206-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]