HsaINT0137723 @ hg19

Intron Retention

Gene

ENSG00000105122 | RASAL3

Description

RAS protein activator like 3 [Source:HGNC Symbol;Acc:26129]

Coordinates

chr19:15562856-15563626:-

Coord C1 exon

chr19:15563469-15563626

Coord A exon

chr19:15562920-15563468

Coord C2 exon

chr19:15562856-15562919

Length

549 bp

Sequences

Splice sites

5' ss Seq

TGGGTGAGC

5' ss Score

7.23

3' ss Seq

CAATCCCCCGACCCCCACAGGAG

3' ss Score

5.64

Exon sequences

Seq C1 exon

TTGGCAGAGCTGCAGTGCGAGGTGGCCGCTCTGCGTGAGGAGCAGAAAGTGCTGTCCCGCCTCGTGGAGTCGCTGAGCACCCAAATCCGGGCCTTGACGGAGCAGCAGGAGCAGCTGCGGGGCCAGCTGCAGGATCTGGACTCCAGGCTCCGTGCTGG

Seq A exon

GTGAGCCCAGCCCTCTCCATTAGCTCCGCCCCCAGGTGGGCCCGATCCAATTAGATCTGACCAGGCCCTCCCCCCCCCCCCCAAACCACGCCTAGCACGGCCAAGCCCCACCCTGGCCCCGCCCCAATAAGTCTGTCCAGGCCCTGCCTCTTGGCAAGCCCCGCCCCCAGGTGGACCCACCCAACGAAGGTCGGCCTAGGACCCTGGCAGATTCTCTCATCCAGGCCCCACCCCTCCATCAGCCCCTCCCAACCTGGCTGGGCCGGGCACTGAGATATCTCAGCCTGGGCACTCCCTCCAGCTCAGTCACGACCCCACCCAGGACTGGCCAAACCCCACCTCCAAGGGATGATTGATAGGTCCTGTCATTCCAACCATTCCCGTCTCTGGTCCGACCCTTCTTCAAGCATATTTAGGCCCCGCCCCTCAGTCTGGACAAGCTCCGCCTCCACTCCAAGCTCCGCCCCCGGAGTCCCTGGCACTCCCACCAGGAGCTGGAAGGGACTTCCTTAGCCTCTGCCCTTCGCCCCAATCCCCCGACCCCCACAG

Seq C2 exon

GAGCTCAGAGTTTGATTCAGAGCACAACCTAACAAGCAATGAAGGGCACAGTCTGAAAAACCTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000105122-RASAL3:NM_022904:16

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.623 A=NA C2=1.000

Domain overlap (PFAM):

C1:

PF045827=Reo_sigmaC=FE(45.2=100),PF101864=Atg14=FE(43.3=100),PF123293=TMF_DNA_bd=FE(74.3=100),PF104824=CtIP_N=FE(50.0=100),PF154501=DUF4631=FE(46.0=100),PF082327=Striatin=FE(50.5=100),PF041569=IncA=FE(39.7=100),PF079267=TPR_MLP1_2=PU(47.2=94.3),PF045137=Baculo_PEP_C=PU(50.5=88.7)

A:

NA

C2:

PF045827=Reo_sigmaC=FE(18.3=100),PF101864=Atg14=FE(17.5=100),PF123293=TMF_DNA_bd=PD(20.0=63.6),PF104824=CtIP_N=FE(20.2=100),PF154501=DUF4631=FE(18.6=100),PF082327=Striatin=FE(20.4=100),PF041569=IncA=FE(16.0=100),PF079267=TPR_MLP1_2=FE(19.8=100),PF045137=Baculo_PEP_C=FE(22.6=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000341905