MmuINT0132055 @ mm10
Intron Retention
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32391336-32392203:-
Coord C1 exon
chr17:32392046-32392203
Coord A exon
chr17:32391400-32392045
Coord C2 exon
chr17:32391336-32391399
Length
646 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CTTGCCCCTGACCCCCACAGTAT
3' ss Score
6.83
Exon sequences
Seq C1 exon
CTAGCAGAGATACAATGTGAGGTGGCTATATTCCGCGAGGCACAGAAAGCTCTGTCCCTTCTGGTGGAGTCGTTGAGTACCCAAGTCCAAGCCTTGAAGGAGCAGCAGGAGCACTTCCGCTGTCAGCTGCAGGATCTGTACTCCAGACTGGGAGCTGG
Seq A exon
GTGAGCCCTGCCCTTCACAGTAGCTCTTATCCCAGGTTCTTGGTCAGGATGGCCCAAATCTCTTCCAGAAAGTCCCTCCCCGCCTAAACCATCCCGCCTCTAGGTCTTAACAGTTCTATAACCTAGATGTGTCACCCTCAAGTTACCAGTTCAAGCCCTGGCAGCCTCTCCCTGCAGGGCCTATCTCACACCTGTCTTTGACTAGTCCTTTTATTTACTCACACCCCCTCAACCAGCCCCTTATAACCCGATTAGGCCATCTGGGCCCTTCCTGCCCATTGGTCAGTCTCAGCCTTCAAATTGATTAAGCATTCCATCACCCCACCCCACCCCAGTGTGTTCCTTCTGTGAAACTAGATTTAACTTTGTAGTCCAGGCTAACCACGCACTCTCTCTCCATCCTCTTGGGCTTTAGCCTCAACCCCCCACCTTGAGTTACAGGGTTGCACCACTACACTTGGCTAGTCTTTGCATCTTAGCTATGCCAAGCTCTAATCAAACCTTGCTTCAGATATACTTATGCCCTGCTCTCTAAACCCCAACTTCACTCCAAGCCCTGCCCACTGAATTCTTGGCAGTGCACTCAGGATGAAAGGGACTTTCTCTGTTTCTGACTTGCCCACTCTCTTGCCCCTGACCCCCACAG
Seq C2 exon
TATCTCAAAGTTGGATTCTAAGGGTGGTCTCCCAAGCAACGGAAGCCACAGGCTGAAAAGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142:ENSMUST00000063824:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGATACAATGTGAGGTGGC
R:
CCTGTGGCTTCCGTTGCTT
Band lengths:
207-853
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types