BtaINT0123203 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023891 | RBM20
Description
RNA binding motif protein 20 [Source:HGNC Symbol;Acc:HGNC:27424]
Coordinates
chr26:31624689-31627217:+
Coord C1 exon
chr26:31624689-31625766
Coord A exon
chr26:31625767-31627155
Coord C2 exon
chr26:31627156-31627217
Length
1389 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTCTCTCCTTCTGGCCTAGGAC
3' ss Score
10.3
Exon sequences
Seq C1 exon
TGCCGCCAAGCTCCTGGACAAGACCCCGTTCTCGGTCAGTAATCCGAACCCGCTGCTTCCTTCGCCCGCCAGCCTCCAGCTGGCCCAACTGCAAGCTCAGCTCACCCTCCACCGGTTGAAGCTGGCACAGACAGCCGTCACCAACAACACCGCGGCTGCCACGGTCCTCAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTGCGGCATCCGTCCATGATCAGCGCCCCCCACGGCCACACCGGGGTGCCCCAACACGCGGCCACCGTGCCCAGCACCCGCTTTCCCTCTAACGCACTCGCCTTCTCACCCCCTGGCCAGACGCGAGGCCCAGGGCCCACGGTGAGCCTTCCCAGCCAGCCCCCCAACGCCATGGTGATGCACCCCTTCATGCCTCAGACCCCCACCCAGCCAGCGGTCATCCTGGGCCTTGGAAAGACTGGGCCCGCGCCCGCTGCTGCAGGGTTCTACGAATATGGCAAAGCCAGCTCTGGCCAGGCATATGGTTCTGAAACCGATGGTCAGCCCGGCTTCCTGCCAGCCTCGGCTGCTACCTCGGGCAGCGTGACCTACGAAGGGCACTACAGCCACTCAGGACAAGATGGCCAGGCTGCCTTTCCCAAGGACTTCTATGGACCCAGTGCCCAAGGGTCGCAGGTGGCAGGTGGATTTGTGGCTGAGCCGGCTGGGGCCTTGAAAGGCGAGGTGGGTCCCCTGCTGCAGGGTCCAAACAGCCAGTGGGAGAGCCCCCATGGGTTCTCTGGCCAGAGCAAGCCTGATCTTGCGGCAGCCCCCAGCCTGTGGCCCCCTCCCCCTGGCCAGCCCTATGAGCTGTATGACCCTGAGGAGCCCACACCAGACAGAACCCCTCCTTCCTTTGGGGGTCGGCTCAACAACAGCAAACAGGGCTTCAGCGGAGCCCGGAGGCGGGCCAAGGAGGAGCAGGCAGTGCTGTCCCTGCGGCCCCTGCAAGCGCACGAGCTGAATGACTTCCACGGTGTGGCCCCCCTCCACCTGCCGCACGTCTGTAGCATCTGCGACAAGAAGGTGTTTGATCTGAAG
Seq A exon
GTGAGTCATCTGAGACCGGCTGGGAGCTCCAGCTGGAGCCTGGGGGAGCTGGCCACCACAACCCAACCCTTGCTGTTCACGGGCTAAGAACTGTGACACTTGGGGGTTGGGTGACAGGATCTTGCCATAGCTACCCTTGATTAAAATCCTTGGTATTAGAACCAACAGGAATTTCAGAAATGTATCAGAGCCAGTCTCTTGCTTTAAGGCAAGTAAGAGAGTCTTACTTGTATTTATAGATGAGAGAGTCAAGGTGAGTGGGGATCAAGGGACCCAACCTGGGTTATGAAAAAGGGACTCAGGAATTAGAGCCTCTGCCTCCTTGAAAAGGGCTTTTCTCTGTAGAGCACCAGGAAGCTTGAGAGTCTATGTTCCTTGAGAACATACATTGTACTGAGTACAAACAGAGAAAAACTTAGCAGAATTTTGAGTCAGACAAGAAAGTCATTCTCAGATGGGACCTAGACAGATTATTATAGAGGGGCCTCAGCTTCTCCATCTGCAGAATGGAGGTAGAGCCTCATGGCACCTTCCCAGCGCTTGGAAAGTGCTTTGGGCCCCTGCAAACAAAAGCCCATGGTAGTATAAATTTCCCCCTAAAATGTATTGCTGATGCAGTAAAATATTCCAAAGCAATAATAATTACAGTTAGCATACTCTTTGTCTGTGTCAGCAATAACTCTCCAAGAGAGACACTATTATTATACCCATTTTACAGATGCAAAGACTGAGGCCCAGAGAGATGAAATGATTTGTCCAGGACCCCATAGTCAGAAAGTGGTGGAGTAGAGATTCAGTTGTGGGTCTGACCCTCCCAGAGCCTGTGCCTCTTAAGCACTGAGCTGTACAGCCTCTTGTCTCTTGTCCTGTCTGCAGAGCGCAATAATCCCTGTTTAGTGGGTGTCCCACCACGGTGTGTCTTTCACCTCTGCTGGGTCATGTCATCCAAATGCATCCCAGTCACCCTGGTGGGACATACCTTCTCACCTCCATCTCTGAAGGGGGTCTGGCTAATATAGGAGGTGATGGAGGATTGAGCCTTTTCTAGGGCTTTCCACCTGCCGGCTTCTCCTATAGAAATTCATCAGTGGGACCAAGGGCCCACTGAGACGGGAAGAGGGAATCAGACTTGTGAATCTGGGCTCCTGTCTGAGATAGACTTGGGATATGCAGGTGGATGCTGGTGGGGTGAGGGCTGGGTAGGGTGGCAGGAGCGGGCCGGGGAGGAGCCTGGATGGTGGGGGAGGAAGGGAGGGAGATGCGCCTGCGGGGTTGGTCCAGCGACTGGGTGCTCTGCGCTCCCTGTGTTTAGGAGGAAGCCCGCACTCATCCATTGCCTTCCCGTGGACTCAGTTCTACTTCGGTCATTTTTCTCTCCTTCTGGCCTAG
Seq C2 exon
GACTGGGAGCTGCATGTAAAAGGGAAACTACATGCTCAGAAATGCCTGCTCTTCTCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023891:ENSBTAT00000046225:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=PU(51.9=3.9)
A:
NA
C2:
PF121713=zf-C2H2_jaz=PD(40.7=52.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAGCAAGCCTGATCTTG
R:
AGCAGGCATTTCTGAGCATGT
Band lengths:
349-1738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]