HsaINT0138375 @ hg38
Intron Retention
Gene
ENSG00000203867 | RBM20
Description
RNA binding motif protein 20 [Source:HGNC Symbol;Acc:HGNC:27424]
Coordinates
chr10:110780801-110783427:+
Coord C1 exon
chr10:110780801-110781884
Coord A exon
chr10:110781885-110783365
Coord C2 exon
chr10:110783366-110783427
Length
1481 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTCTTTCCTTCTGACCTAGGAC
3' ss Score
10.33
Exon sequences
Seq C1 exon
TGCCGCCAAGCTCCTGGACAAGAACCCATTCTCGGTCAGTAACCCGAACCCTCTGCTTCCTTCACCTGCCAGTCTCCAGCTGGCTCAACTGCAGGCCCAGCTCACCCTCCACCGGCTGAAGCTGGCACAGACAGCTGTCACCAACAACACTGCAGCCGCCACAGTCCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAATCAACTGAGGCATCCGTCTGTGATCACTGGCCCCCACGGCCATGCTGGGGTTCCCCAACATGCTGCAGCCATACCCAGTACCCGGTTTCCCTCTAATGCAATTGCCTTTTCACCCCCCAGCCAGACACGAGGCCCCGGACCCTCCATGAACCTTCCCAACCAGCCACCCAGTGCCATGGTGATGCATCCTTTCACTGGGGTAATGCCTCAGACCCCTGGCCAGCCAGCAGTCATCTTGGGCATTGGCAAGACTGGGCCTGCTCCAGCTACAGCAGGATTCTATGAGTATGGCAAAGCCAGCTCTGGCCAGACATATGGCCCTGAAACAGATGGTCAGCCTGGCTTCCTGCCATCCTCGGCCTCAACCTCGGGCAGTGTGACCTATGAAGGGCACTACAGCCACACAGGGCAGGATGGTCAAGCTGCCTTTTCCAAAGATTTTTACGGACCCAACTCCCAAGGTTCACATGTGGCCAGCGGATTTCCAGCTGAGCAGGCTGGGGGCCTGAAAAGTGAGGTCGGGCCACTGCTGCAGGGCACAAACAGCCAATGGGAGAGCCCCCATGGATTCTCGGGCCAAAGCAAGCCTGATCTCACAGCAGGTCCCATGTGGCCTCCACCCCACAACCAGCCCTATGAGCTGTACGACCCCGAGGAACCAACCTCAGACAGGACACCTCCTTCCTTCGGGGGTCGGCTTAACAACAGCAAACAGGGTTTTATCGGTGCTGGGCGGAGGGCCAAGGAGGACCAGGCGTTGCTATCTGTGCGGCCCCTGCAGGCTCATGAGCTGAACGACTTTCACGGTGTGGCCCCCCTCCACTTGCCGCATATCTGTAGCATCTGTGACAAGAAGGTGTTTGATTTGAAG
Seq A exon
GTGAGTTGTCCAAGACAGGCTGGGAGCCACAGCTAGAAGCCTGGGCAGGCCTTTCCCCATGACCCAACTCACGCTGCCAATGGGCAAGGAACTGTTGCATTGGGGTAACAGAATTTTGCCATCAGTATTCTTGACTAAAATCACAGGTATTAGGACCCATAGGAATTTCAGAAATGTATCAGGACCAGTCCCTTGCTTGAAGGTGAGTCAGAAATTCTTACACACTTTTTCTAGATGAGAAAGCTGAGGCTGAGTAGGGGAGCAAAGGACCCCACCTGGGTTGCAGAGAGAAGGGGCTCAGGAGTTTCCTGCCTTCTCGTGGAGGGCTTCTCCCCCGTAGTATGCCTAGAATCTACTGCCCCTTGAGTACCCATATTGTAGTGAGTTAGAAAAGAAAAAAAGCAGAATTTTGGATCAGGGGAAACAGATTAATTCCCCCTTGGGACCTAGACAAATTATTATAGAGAGCCTCAGCTTCCCCATCAGCAAAATGGAGGTAGAGTCTCATGACACCTTCCCGGTGGTTGGGAAATGCTTTGAGTTCCTGCAAACAGAGGTATATGATAGTATAATGTCCCCCCAAAAAATGTATTGCAGATGCAGTGAAATATTTTGAAGCAATAACAATTATAACAAATACCATATATTAAACCCTTTCTGTGTGCCAGCAGTAACTCTTATGAGGTAGATATTATTATGATTTTCATTTTACAGATGAGAAAACTGAGGCCCAGAGAGATGAGATGACTTACTCAGCCCCTTCTCCCCGCCACCTCCCCAGCTTGAAAGTGGCAGAGTGGAGATTCAAATGTGGCCCTGACCCTTTCAGAGCCTGCACCATTTAAACACTGGGCTGTCCTGCCTCCCATCTCTCATCCTGTCCAAAAGCATAATAATGTCCTTGCAGAGTGTGAGTCACACTGCAGCATGTCATTCACCTCTGTTTGGGTCACACCATCCAAGTGCATCCCTGTGACCCAGATAGGACATGCCCTCTGACCTCTAGTCTTGGGAGGGGACTAGCTGACACGGGGAGGTGCTCAAGGATTTTGTCTCTCATGAACCTTTTCTAAGGCTTTGTAAGTCACTGTGAGTCTACCTGCCAGATTCTCCCAACTGGATATGAAATAGGTGGGGTCTTCCTGGGGGAAAGGAGAAGGGGTGGGAGGTGGGAGGTAGGTGGTGGGGGCAAGGGTCCATTGAGAGGGGTAGAGGGAATCCAATTTGTGAGTCTGGGCTCCTGTTCAAGATGGGCATGAGATGTATGGATGAGGAGCTGATGGAGCAAAGGCTGGATGGGGAGGCAGGAACAGTGGGAGGAGCCTGGGAGGGAGAGAGGAAGGGTGGAGGGATGTGTCTGCAGGGGTGGTCCAGCCTCTGGGCGCTCTGTGCTCCCTGCCTGACCAGTGTCTCTGTGCTCATCCTTTGCCTTCCCATGGACTCAGTTCTACTTTGGTCACTTTTCTTTCCTTCTGACCTAG
Seq C2 exon
GACTGGGAGCTGCATGTGAAAGGGAAGCTGCACGCTCAGAAATGCCTGGTCTTCTCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203867:ENST00000369519:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.790 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAGCCTGATCTCACAGC
R:
AAGACCAGGCATTTCTGAGCG
Band lengths:
345-1826
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development