BtaINT0123564 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94012497-94013027:-
Coord C1 exon
chr11:94012814-94013027
Coord A exon
chr11:94012582-94012813
Coord C2 exon
chr11:94012497-94012581
Length
232 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
GTCATTGTTTCTTTCTACAGATT
3' ss Score
10.56
Exon sequences
Seq C1 exon
GACCTGGACAGTGGGGATGTTAAGAGAAGAGTGCATTTATTTGAAACTCAGAGAAGGACAAAAGAAGAAGATCCAATAATTCCTTTTAGTGATGGACCCATCATCTCAAAATGGGGTGCGATTTCTAGATCTTCCCGTACTGGTTACCATACCACGGACCCTGTCCAGGCCACTGCTTCCCAAGGAAGTGCAACCAAGCCCATCAGTGTATCAG
Seq A exon
GTAATCCATATCATTAGTACTTCACCTGGTATGGTCTAGCACTGTGCTTTATAATCCTCACTCTGTTAGGTATAGAACATGTCTCTCCATTTAACAACCACTGTAAACCTAGAGTTAAACAGCTTAGCCAGGAGAGCATGGCTACTTAGATAAAAGTGGATTTTTGGGGGAAGGTATACATTCACATCTGCATCTAATTTTTCACTTTTCTGGTCATTGTTTCTTTCTACAG
Seq C2 exon
ATTATGTACCTTATGTCAATGCTGTTGATTCAAGGTGGAGTTCATATGGTAATGAGGCTACATCATCAGCACATTATATTGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867:ENSBTAT00000032789:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF080437=Xin=WD(100=19.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGACAGTGGGGATGTT
R:
TATAATGTGCTGATGATGTAGCCTCA
Band lengths:
292-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development