DreINT0125621 @ danRer10
Intron Retention
Gene
ENSDARG00000063050 | rc3h2
Description
ring finger and CCCH-type domains 2 [Source:ZFIN;Acc:ZDB-GENE-060503-694]
Coordinates
chr10:9805240-9805620:+
Coord C1 exon
chr10:9805240-9805453
Coord A exon
chr10:9805454-9805535
Coord C2 exon
chr10:9805536-9805620
Length
82 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTAA
5' ss Score
-0.71
3' ss Seq
ATGTTCTCCTCTGTTTTCAGACT
3' ss Score
10.48
Exon sequences
Seq C1 exon
GAAGAGGAGAGTGGTGGCAAACGGTGGTTGCATGTGTTGGAACCATACAGACGACTGAAAGAAGAAGATCCCATTATTCCTTTTGGAGAAGGGCCCATCATCTCCAAATGGGGAGCCATTTCACGCGCTTCTCGCACCGGTTTTCACACCACTGACCCGGTCCAGGCCACAGCATCACAGGGGTGCACCGGTACCACCTCCATCAACTTCAGAG
Seq A exon
GTTTAAATTTATATTGCATGTTGTGATTTTTGAATGTTTTTCTTCAGCTTTTAGAATGATTCATGTTCTCCTCTGTTTTCAG
Seq C2 exon
ACTATGGCTGTCATATTGGTCACAGTGACCTTAGATGGGGCCCACGCAGTTCTGATTCCTCCACTCACTCCAGCTTTTTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063050:ENSDART00000147997:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.483
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATCATCTCCAAATGGGG
R:
GAGGAATCAGAACTGCGTGGG
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]