GgaINT0125476 @ galGal4
Intron Retention
Gene
ENSGALG00000001253 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr17:8786796-8787255:-
Coord C1 exon
chr17:8787042-8787255
Coord A exon
chr17:8786881-8787041
Coord C2 exon
chr17:8786796-8786880
Length
161 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TGTATCTTAAATGGTTGCAGATT
3' ss Score
6.08
Exon sequences
Seq C1 exon
GATTTGGACAGCGGTGATGTTAAAAGGAGAGTGCATTTATTTGAAACTCAGAGAAGGGCAAAGGAAGAAGATCCTATAATCCCATTTAGTGATGGACCGATCATTTCCAAGTGGGGTGCAATCTCCAGGTCATCCCGCACGGGTTATCACACAACAGATCCAATTCAGGCCACTGCTTCCCAAGGAAGTGCAACTAAGCCCATCAGTGTATCAG
Seq A exon
GTACAAGTACAGGCTTCATACTGACAATATGGTGTATATTGTGAGCATTTCATCCAGTTTATACTTAATACAGCAATGGAAATGTGAAGAACTAAGAATACCTGTATACCCTACTTTTAAAGAATGGAGAAGGTAATGAGCTGTATCTTAAATGGTTGCAG
Seq C2 exon
ATTATGTTCCTTATGTCAATGCTGTTGACTCAAGGTGGAGTTCTTATGGCTCAGATTCAGCATCATCAGCACGTTATGCAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001253:ENSGALT00000001902:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF080437=Xin=WD(100=19.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTGGACAGCGGTGATGTT
R:
ACTCCACCTTGAGTCAACAGC
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]