BtaINT0123565 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94012147-94012581:-
Coord C1 exon
chr11:94012497-94012581
Coord A exon
chr11:94012229-94012496
Coord C2 exon
chr11:94012147-94012228
Length
268 bp
Sequences
Splice sites
5' ss Seq
ACGGTAACG
5' ss Score
7.77
3' ss Seq
AAACAAATTTCTCTTTAAAGCGA
3' ss Score
5.95
Exon sequences
Seq C1 exon
ATTATGTACCTTATGTCAATGCTGTTGATTCAAGGTGGAGTTCATATGGTAATGAGGCTACATCATCAGCACATTATATTGAACG
Seq A exon
GTAACGTTGCTCTTAATTCTTTAGGATTCTCTATTCTCAGACTTGTCTATATTCCCAAAGTACAGATCGAAGTCCCAGTTATTCATGAACTGTGTTTTGCTAGTGTTAACTATATAATGAATTTCTGAAAAAAGTTTACATCTGGAATAATGATTGAAACTTTCAGGGTTGATCTGTTATGTAAAACATATATAGTATATAGTTATTATATAGTCATTACTTCTTTAGTTGCTTCATTTTGTAACAGTAAACAAATTTCTCTTTAAAG
Seq C2 exon
CGACAGATTCATTGTTACCGATTTATCTGGTCATAGAAAGCATTCCAGTACTGGAGACCTTTTGAGCATTGAACTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867:ENSBTAT00000032789:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTACCTTATGTCAATGCTGTTGA
R:
CTGCTGAAGTTCAATGCTCAA
Band lengths:
164-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development